RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SLC39A9Q9NUM3 307 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 LYNX1G3V0Z9 82 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 APOC3P02656 99 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 LYNX1P0DP58 116 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 BRS3P32247 399 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 C9orf62Q8N4C0 152 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 KCNRGQ8N5I3 272 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 BVESQ8NE79 360 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 CORO2AQ92828 525 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 IL22RA2Q969J5 263 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 DMRTA2Q96SC8 542 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 CRIM1Q9NZV1 1036 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 POMT1Q9Y6A1 747 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 PRR14LQ5THK1 2151 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 IGLV3-9A0A075B6K5 115 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 ACAA1P09110 424 aaPredicted RBP9.71□□□□□ -0.85
VPS4A-201ENST00000254950 EGR1P18146 543 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 P2RY1P47900 373 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 RND3P61587 244 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 ARF6P62330 175 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 TMEM187Q14656 261 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF672Q499Z4 452 aaPredicted RBP9.71□□□□□ -0.85
VPS4A-201ENST00000254950 Q6P435 159 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 RTN4RL2Q86UN3 420 aa9.71□□□□□ -0.85
VPS4A-201ENST00000254950 RTBDNQ9BSG5 229 aaPredicted RBP9.71□□□□□ -0.85
VPS4A-201ENST00000254950 NCBP2LA6PVI3 153 aaKnown RBP9.71□□□□□ -0.86
VPS4A-201ENST00000254950 HMGB3O15347 200 aaKnown RBP9.71□□□□□ -0.86
VPS4A-201ENST00000254950 THBDP07204 575 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 SLC25A4P12235 298 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 CCDC144NLQ6NUI1 221 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 TEX261Q6UWH6 196 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 RHOVQ96L33 236 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 FBXL17Q9UF56 701 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 PRNDQ9UKY0 176 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 U3KQ87 197 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM178BH3BS89 294 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 TSPAN9O75954 239 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 OR2A4O95047 310 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 GAPDHP04406 335 aaKnown RBP9.71□□□□□ -0.86
VPS4A-201ENST00000254950 METTL15P1P0C7V9 234 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 H2BFSP57053 126 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 TAGLNQ01995 201 aaKnown RBP9.71□□□□□ -0.86
VPS4A-201ENST00000254950 GUSBP1Q15486 140 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 THNSL2Q86YJ6 484 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 ABHD12Q8N2K0 398 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 OR5C1Q8NGR4 320 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 OR2A7Q96R45 310 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 ZNF581Q9P0T4 197 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 MMP24Q9Y5R2 645 aa9.71□□□□□ -0.86
VPS4A-201ENST00000254950 MED13LQ71F56 2210 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 MC5RP33032 325 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM65Q6PI78 240 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 S100A7AQ86SG5 101 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 LHX4Q969G2 390 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM267Q0VDI3 215 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-201ENST00000254950 PEA15Q15121 130 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 LGALSLQ3ZCW2 172 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM182Q6ZP80 229 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-201ENST00000254950 LHFPL1Q86WI0 220 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 DTD1Q8TEA8 209 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 HS3ST6Q96QI5 342 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 TP53RKQ96S44 253 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 SLC25A32Q9H2D1 315 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 FOXH1O75593 365 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 PLAUP00749 431 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 ELLP55199 621 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-201ENST00000254950 SELENOHQ8IZQ5 122 aaKnown RBP9.7□□□□□ -0.86
VPS4A-201ENST00000254950 FGFRL1Q8N441 504 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 CD177Q8N6Q3 437 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 ANGPTL6Q8NI99 470 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 OR10C1Q96KK4 312 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 CLEC7AQ9BXN2 247 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 UQCC1Q9NVA1 299 aa9.7□□□□□ -0.86
VPS4A-201ENST00000254950 TRBV6-6A0A0A6YYG2 114 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 SELLP14151 372 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 ANOS1P23352 680 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 OR2B8PP59922 312 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 HTD2P86397 168 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 SLC38A11Q08AI6 406 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 SPINK9Q5DT21 86 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 NCR3LG1Q68D85 454 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 ETV3LQ6ZN32 361 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 BIVMQ86UB2 503 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 PRORYQ9H606 182 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 F8W036 122 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 UCP1P25874 307 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 HMGN3Q15651 99 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 WDR86Q86TI4 376 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 ZDHHC16Q969W1 377 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM186Q96B77 213 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 TNFSF18Q9UNG2 199 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 IGKV1D-13A0A0B4J2D9 117 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 OPN1MWP04001 364 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 OPN1MW2P0DN77 364 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 OPN1MW3P0DN78 364 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 IGKV1-13P0DP09 117 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 GATA4P43694 442 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 PARP12Q9H0J9 701 aaKnown RBP9.69□□□□□ -0.86
VPS4A-201ENST00000254950 C1RLQ9NZP8 487 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 METRNQ9UJH8 293 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms