RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ADAT3Q96EY9 351 aaPredicted RBP11.05□□□□□ -0.64
USP40-201ENST00000251722 ABHD14BQ96IU4 210 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 KCNK17Q96T54 332 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 ABHD14AQ9BUJ0 271 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 UPK3AO75631 287 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 HLA-DQB1P01920 261 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 COL10A1Q03692 680 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 ZAR1Q86SH2 424 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 SPSB2Q99619 263 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 TMUB1Q9BVT8 246 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 SLC2A8Q9NY64 477 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 TRPM6Q9BX84 2022 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 ANKRD55Q3KP44 614 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 CTHRC1Q96CG8 243 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 OR4C12Q96R67 309 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 PLSCR4Q9NRQ2 329 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 ZNF737O75373 536 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 IGKV1D-16P01601 117 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 SPRED2Q7Z698 418 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 MYPOPQ86VE0 399 aaPredicted RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 AKIRIN1Q9H9L7 192 aaPredicted RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 SDK1Q7Z5N4 2213 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 TRAV39A0A0B4J263 110 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 ATXN7O15265 892 aaPredicted RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 LAMTOR1Q6IAA8 161 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 SELENOHQ8IZQ5 122 aaKnown RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 OR8I2Q8N0Y5 310 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 OR5C1Q8NGR4 320 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 CCL19Q99731 98 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 MRPS18BQ9Y676 258 aaKnown RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 COL11A1P12107 1806 aaPredicted RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 TRAV30A0A087WSZ9 112 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 CST7O76096 145 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 RAB9AP51151 201 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 C10orf128Q5T292 105 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 TMEM136Q6ZRR5 245 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 MMD2Q8IY49 270 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 FAM131CQ96AQ9 280 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 TMEM186Q96B77 213 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 PARLQ9H300 379 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 DTX4Q9Y2E6 619 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 HSPB1P04792 205 aaKnown RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 KLF9Q13886 244 aaPredicted RBP11.04□□□□□ -0.64
USP40-201ENST00000251722 MMDQ15546 238 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 OR4D11Q8NGI4 311 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 TMEM204Q9BSN7 226 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 SLC7A10Q9NS82 523 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 CLEC5AQ9NY25 188 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 HSF4Q9ULV5 492 aa11.04□□□□□ -0.64
USP40-201ENST00000251722 LOC101059948A0A1B0GTJ6 334 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 RBPMS2Q6ZRY4 209 aaKnown RBP11.03□□□□□ -0.64
USP40-201ENST00000251722 OR10G4Q8NGN3 311 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 OR10G9Q8NGN4 311 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 OR10G7Q8NGN6 311 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 FAM57AQ8TBR7 257 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 GALNT14Q96FL9 552 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 APOBEC3AP31941 199 aaPredicted RBP11.03□□□□□ -0.64
USP40-201ENST00000251722 RPL30P62888 115 aaKnown RBP11.03□□□□□ -0.64
USP40-201ENST00000251722 CFHR1Q03591 330 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 ATRAIDQ6UW56 229 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 Q6ZT83 130 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 TIMP4Q99727 224 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 PPP1R3EQ9H7J1 279 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 TMEM238LA0A1B0GVL6 79 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 A6NJY4 79 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 TMEM33P57088 247 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 IRF3Q14653 427 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 TMEM249Q2WGJ8 235 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 MRGPRGQ86SM5 289 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 OR10G8Q8NGN5 311 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 OR2V2Q96R30 315 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 SRD5A3Q9H8P0 318 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 OR51B2Q9Y5P1 312 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 DSPPQ9NZW4 1301 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 NPIPB7O75200 414 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 SELENOTP62341 195 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 RAB32Q13637 225 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 TMEM54Q969K7 222 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 CYSLTR1Q9Y271 337 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 MYO16Q9Y6X6 1858 aa11.03□□□□□ -0.64
USP40-201ENST00000251722 IGHV2-70P01814 119 aa11.02□□□□□ -0.64
USP40-201ENST00000251722 SNRPCP09234 159 aaKnown RBP11.02□□□□□ -0.64
USP40-201ENST00000251722 LIMS1P48059 325 aa11.02□□□□□ -0.64
USP40-201ENST00000251722 GLIPR1P48060 266 aa11.02□□□□□ -0.64
USP40-201ENST00000251722 UBE2L3P68036 154 aaKnown RBP11.02□□□□□ -0.64
USP40-201ENST00000251722 GREB1LQ9C091 1923 aaPredicted RBP11.02□□□□□ -0.64
USP40-201ENST00000251722 COL4A1P02462 1669 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 IGSF23A1L1A6 192 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 WNT9BO14905 357 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 LTBRP36941 435 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 ATP5J2P56134 94 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 OR11H4Q8NGC9 324 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 IDI2-AS1Q9NZ38 188 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 MPDU1O75352 247 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 SP6Q3SY56 376 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 PRSS27Q9BQR3 290 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 TRPM7Q96QT4 1865 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 TMEM262E9PQX1 116 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 H3BVH4 76 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 MPV17P39210 176 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms