RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 RNASE11Q8TAA1 199 aaKnown RBP15.35■□□□□ 0.05
CLN3-263ENST00000637871 EDARADDQ8WWZ3 215 aa15.35■□□□□ 0.05
CLN3-263ENST00000637871 ZSCAN5BA6NJL1 495 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 ZNF737O75373 536 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 ZNF66Q6ZN08 573 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 SPAG16Q8N0X2 631 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 OR51H1Q8NH63 302 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 SUN5Q8TC36 379 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 GPR146Q96CH1 333 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 OR2V2Q96R30 315 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 NGBQ9NPG2 151 aa15.34■□□□□ 0.05
CLN3-263ENST00000637871 TNFSF12O43508 249 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 SPP1P10451 314 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 F2RL1P55085 397 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 TAS2R30P59541 319 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 POLR2GP62487 172 aaKnown RBP eCLIP15.33■□□□□ 0.04
CLN3-263ENST00000637871 TMEM252Q8N6L7 170 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 CD177Q8N6Q3 437 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 OR1L1Q8NH94 360 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 Q8TCH9 128 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 FAM222BQ8WU58 562 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 WFIKKN1Q96NZ8 548 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 PPP1R3CQ9UQK1 317 aa15.33■□□□□ 0.04
CLN3-263ENST00000637871 ANKHD1Q8IWZ3 2542 aaKnown RBP15.33■□□□□ 0.04
CLN3-263ENST00000637871 TRAV39A0A0B4J263 110 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 IGHV3-64DA0A0J9YX35 117 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 TRIM77I1YAP6 450 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 CEBPDP49716 269 aaPredicted RBP15.32■□□□□ 0.04
CLN3-263ENST00000637871 TMEM30BQ3MIR4 351 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 HIST2H2BCQ6DN03 193 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 LRP11Q86VZ4 500 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 CD300LFQ8TDQ1 290 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 LRRC46Q96FV0 321 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 NARFLQ9H6Q4 476 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 OR6C3Q9NZP0 311 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 RNF7Q9UBF6 113 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 JPT1Q9UK76 154 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 KLF2Q9Y5W3 355 aaPredicted RBP15.32■□□□□ 0.04
CLN3-263ENST00000637871 WSB1Q9Y6I7 421 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 ITGB1BP1O14713 200 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 MED6O75586 246 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 DFFBO76075 338 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 THBDP07204 575 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 CAV2P51636 162 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 MSMPQ1L6U9 139 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 CXorf66Q5JRM2 361 aaPredicted RBP15.32■□□□□ 0.04
CLN3-263ENST00000637871 ZNF561Q8N587 486 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 GCSAMQ8N6F7 178 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 LYPD6BQ8NI32 183 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 PSMG3-AS1Q96PY0 264 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 HSD17B10Q99714 261 aaKnown RBP15.32■□□□□ 0.04
CLN3-263ENST00000637871 RNF115Q9Y4L5 304 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 MMP24Q9Y5R2 645 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 PTPN13Q12923 2485 aa15.32■□□□□ 0.04
CLN3-263ENST00000637871 CRYBG3Q68DQ2 2970 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 UMAD1C9J7I0 102 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 ATP6V1G2-DDX39BF2Z307 99 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 K7N7A8 449 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 LGALS8O00214 317 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 CHST1O43916 411 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 LY86O95711 162 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 DANCRP0C864 163 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 IGFBP2P18065 325 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 GLIPR1P48060 266 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 AKR1C2P52895 323 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 PXDC1Q5TGL8 231 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 STX12Q86Y82 276 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 WFDC8Q8IUA0 241 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 BPIFCQ8NFQ6 507 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 MRGPRDQ8TDS7 321 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 GNPNAT1Q96EK6 184 aaPredicted RBP15.31■□□□□ 0.04
CLN3-263ENST00000637871 SMIM3Q9BZL3 60 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 FAM234AQ9H0X4 552 aa15.31■□□□□ 0.04
CLN3-263ENST00000637871 IGKV1D-17A0A075B6S4 117 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 ODAMA1E959 279 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 TMEM218A2RU14 115 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 FAM24AA6NFZ4 105 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 C3orf80F5H4A9 247 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 C15orf65H3BRN8 121 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 TOR1AO14656 332 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 SSSCA1O60232 199 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 YPEL1O60688 119 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 ARHGDIBP52566 201 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 TNFAIP6P98066 277 aaPredicted RBP15.3■□□□□ 0.04
CLN3-263ENST00000637871 NHLH2Q02577 135 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 EIF4EBP1Q13541 118 aaPredicted RBP15.3■□□□□ 0.04
CLN3-263ENST00000637871 MST1LQ2TV78 715 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 ZNF585BQ52M93 769 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 BTNL8Q6UX41 500 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 MOGAT3Q86VF5 341 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 ITLN1Q8WWA0 313 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 YPEL2Q96QA6 119 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 MRPL37Q9BZE1 423 aaKnown RBP15.3■□□□□ 0.04
CLN3-263ENST00000637871 CACFD1Q9UGQ2 172 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 GAB2Q9UQC2 676 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 DCHS2Q6V1P9 2916 aa15.3■□□□□ 0.04
CLN3-263ENST00000637871 NBPF19A0A087WUL8 3843 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 SPRY3O43610 288 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 FBXO24O75426 580 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 CD55P08174 381 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms