RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 GNAO1P09471 354 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 EGR2P11161 476 aaPredicted RBP12.48□□□□□ -0.41
CLN3-246ENST00000636228 HTR2CP28335 458 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 WNT4P56705 351 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 PLGLAQ15195 96 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 NKAIN3Q8N8D7 197 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 SETD9Q8NE22 299 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 BPIFB6Q8NFQ5 453 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 ABHD5Q8WTS1 349 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 ARPC1AQ92747 370 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 ABHD14BQ96IU4 210 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 MS4A10Q96PG2 267 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 RCHY1Q96PM5 261 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 FAM103A1Q9BTL3 118 aaKnown RBP12.48□□□□□ -0.41
CLN3-246ENST00000636228 TOLLIPQ9H0E2 274 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 CST11Q9H112 138 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 ABRACLQ9P1F3 81 aa12.48□□□□□ -0.41
CLN3-246ENST00000636228 RYR2Q92736 4967 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 RRHO14718 337 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 MYL12BO14950 172 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 RPS27AP62979 156 aaKnown RBP12.47□□□□□ -0.41
CLN3-246ENST00000636228 ACSM3Q53FZ2 586 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 LY6G6FQ5SQ64 297 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 ZNF660Q6AZW8 331 aaPredicted RBP12.47□□□□□ -0.41
CLN3-246ENST00000636228 LRRTM1Q86UE6 522 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 HAPLN4Q86UW8 402 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 NANOGP1Q8N7R0 232 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 CHMP1AQ9HD42 196 aaPredicted RBP12.47□□□□□ -0.41
CLN3-246ENST00000636228 TPSG1Q9NRR2 321 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 GHRLQ9UBU3 117 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 STEAP1Q9UHE8 339 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 PSORS1C1Q9UIG5 152 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 FOXA2Q9Y261 457 aaPredicted RBP12.47□□□□□ -0.41
CLN3-246ENST00000636228 ERGIC3Q9Y282 383 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 LRRC42Q9Y546 428 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 NUBP2Q9Y5Y2 271 aa12.47□□□□□ -0.41
CLN3-246ENST00000636228 TRIM64CA6NLI5 447 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 CD1AP06126 327 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 GSTP1P09211 210 aaKnown RBP12.46□□□□□ -0.41
CLN3-246ENST00000636228 FRMD6-AS1P0C7T7 363 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 LINC00205P59089 165 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 UNC119Q13432 240 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 CASC10Q5T4H9 136 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 PPP1R27Q86WC6 154 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 SVOPQ8N4V2 548 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 MUC7Q8TAX7 377 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 HDHD3Q9BSH5 251 aaPredicted RBP12.46□□□□□ -0.41
CLN3-246ENST00000636228 TMED9Q9BVK6 235 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 GAR1Q9NY12 217 aaKnown RBP12.46□□□□□ -0.41
CLN3-246ENST00000636228 CNOT2Q9NZN8 540 aaKnown RBP12.46□□□□□ -0.41
CLN3-246ENST00000636228 PIPOXQ9P0Z9 390 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 SLC23A1Q9UHI7 598 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 RNF150Q9ULK6 438 aa12.46□□□□□ -0.41
CLN3-246ENST00000636228 DYNC2H1Q8NCM8 4307 aaKnown RBP12.46□□□□□ -0.42
CLN3-246ENST00000636228 A0A0A6YYD4 124 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 H0YJW9 148 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 H7C2Y5 167 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 RAB29O14966 203 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 LGALS1P09382 135 aaKnown RBP12.45□□□□□ -0.42
CLN3-246ENST00000636228 GP9P14770 177 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 MAPK3P27361 379 aaPredicted RBP12.45□□□□□ -0.42
CLN3-246ENST00000636228 RBM48Q5RL73 367 aaKnown RBP12.45□□□□□ -0.42
CLN3-246ENST00000636228 ACSM6Q6P461 480 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 UNQ5815/PRO19632Q6UWF5 114 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 C8orf59Q8N0T1 100 aaPredicted RBP12.45□□□□□ -0.42
CLN3-246ENST00000636228 DRAXINQ8NBI3 349 aaPredicted RBP12.45□□□□□ -0.42
CLN3-246ENST00000636228 TMEM59Q9BXS4 323 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 OR1A1Q9P1Q5 309 aa12.45□□□□□ -0.42
CLN3-246ENST00000636228 NAPSAO96009 420 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 UBBP0CG47 229 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 CRIP2P52943 208 aaPredicted RBP12.44□□□□□ -0.42
CLN3-246ENST00000636228 PSG5Q15238 335 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 SRSF7Q16629 238 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLN3-246ENST00000636228 ACTBL2Q562R1 376 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 C1orf100Q5SVJ3 147 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 GLT8D1Q68CQ7 371 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 FAM71F2Q6NXP2 309 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 ZNF880Q6PDB4 577 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 LFNGQ8NES3 379 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 C11orf54Q9H0W9 315 aaPredicted RBP12.44□□□□□ -0.42
CLN3-246ENST00000636228 PLEKHJ1Q9NW61 149 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 AK3Q9UIJ7 227 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 DNAH7Q8WXX0 4024 aa12.44□□□□□ -0.42
CLN3-246ENST00000636228 SOCS1O15524 211 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 PROP1O75360 226 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 CEACAM6P40199 344 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 TPPP2P59282 170 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 QRFPP83859 136 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 TMEM267Q0VDI3 215 aaPredicted RBP12.43□□□□□ -0.42
CLN3-246ENST00000636228 P2RY14Q15391 338 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 CEACAM19Q7Z692 300 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 PACRGLQ8N7B6 248 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 KCNG3Q8TAE7 436 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 AGMATQ9BSE5 352 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 TM2D1Q9BX74 207 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 GHITMQ9H3K2 345 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 PLCXD1Q9NUJ7 323 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 METTL1Q9UBP6 276 aaKnown RBP12.43□□□□□ -0.42
CLN3-246ENST00000636228 WASHC3Q9Y3C0 194 aa12.43□□□□□ -0.42
CLN3-246ENST00000636228 STAB2Q8WWQ8 2551 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms