RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 IGKV1-5P01602 117 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 PVALBP20472 110 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 KITLGP21583 273 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 S100GP29377 79 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 MEOX2P50222 304 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ID3Q02535 119 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 COTL1Q14019 142 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ZNF585BQ52M93 769 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 OR13A1Q8NGR1 328 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 GALMQ96C23 342 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ABHD14BQ96IU4 210 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 SPIN2AQ99865 258 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 SPIN2BQ9BPZ2 258 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 C11orf1Q9H5F2 150 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 DSCAMO60469 2012 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 TMEM30CPA0ZSE6 113 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 RNASEK-C17orf49H0YIS7 233 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 DNASE2O00115 360 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 CAMLGP49069 296 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 PAX9P55771 341 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 RPL30P62888 115 aaKnown RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 ZNF816Q0VGE8 651 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 UQCC3Q6UW78 93 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 BTNL8Q6UX41 500 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 CBLN2Q8IUK8 224 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ZNRF1Q8ND25 227 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 SAT2Q96F10 170 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 FAM212BQ9NTI7 297 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 LYRM2Q9NU23 88 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 COA4Q9NYJ1 87 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 WASF3Q9UPY6 502 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 WIPI2Q9Y4P8 454 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ABCA4P78363 2273 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 KRASP01116 189 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 SPP1P10451 314 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 NFYBP25208 207 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 NBL1P41271 181 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 HMGN3Q15651 99 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 FAM213BQ8TBF2 198 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 C5orf30Q96GV9 206 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 OR2V2Q96R30 315 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 ZFP57Q9NU63 452 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 RNF115Q9Y4L5 304 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 COL6A6A6NMZ7 2263 aa8.9□□□□□ -0.98
CUX1-221ENST00000622516 GPR37O15354 613 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 TXNL1O43396 289 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 TSPAN15O95858 294 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 CRYAAP02489 173 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 SFTA3P0C7M3 94 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 ATP6V0CP27449 155 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 PLA2G5P39877 138 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 RPS16P62249 146 aaKnown RBP8.9□□□□□ -0.99
CUX1-221ENST00000622516 C1orf185Q5T7R7 199 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 ETV3LQ6ZN32 361 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 MOGAT3Q86VF5 341 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 MUCL1Q96DR8 90 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 AKR1E2Q96JD6 320 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 GINS3Q9BRX5 216 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 PLEKHF2Q9H8W4 249 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 TP53TG5Q9Y2B4 290 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 DCHS2Q6V1P9 2916 aa8.9□□□□□ -0.99
CUX1-221ENST00000622516 YLPM1P49750 1951 aaKnown RBP8.9□□□□□ -0.99
CUX1-221ENST00000622516 DANCRP0C864 163 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 AKR1C3P42330 323 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 NPBWR1P48145 328 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 PPT1P50897 306 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 F2RL1P55085 397 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 MOB1BQ7L9L4 216 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 TGIF2LYQ8IUE0 185 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 ZNF295-AS1Q8N0V1 137 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 OR2G3Q8NGZ4 309 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 CACFD1Q9UGQ2 172 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 MLXQ9UH92 298 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 EIF3GO75821 320 aaKnown RBP eCLIP8.89□□□□□ -0.99
CUX1-221ENST00000622516 LMO1P25800 156 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 PRDX2P32119 198 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 G6PCP35575 357 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 SMIM21Q3B7S5 101 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 UTF1Q5T230 341 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 MBNL2Q5VZF2 373 aaKnown RBP8.89□□□□□ -0.99
CUX1-221ENST00000622516 IL34Q6ZMJ4 242 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 ZCCHC24Q8N2G6 241 aaKnown RBP8.89□□□□□ -0.99
CUX1-221ENST00000622516 DEFB108BQ8NET1 73 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 ARV1Q9H2C2 271 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 NCOR1P1Q9H4R4 102 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 PARP11Q9NR21 331 aa8.89□□□□□ -0.99
CUX1-221ENST00000622516 IGKV1D-17A0A075B6S4 117 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 KIAA1324LA8MWY0 1029 aaPredicted RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 C1QTNF9BB2RNN3 333 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 H7C2Y5 167 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 METTL15P1P0C7V9 234 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 PRR30Q53SZ7 412 aaPredicted RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 SPINK9Q5DT21 86 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 DUX4L9Q6RFH8 374 aaPredicted RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 SVBPQ8N300 66 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 FGFRL1Q8N441 504 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 NINJ1Q92982 152 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 EIF5A2Q9GZV4 153 aaKnown RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 FAM234AQ9H0X4 552 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 OOEPA6NGQ2 149 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms