RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DTD1Q8TEA8 209 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 HIST1H2BLQ99880 126 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 TMEM147Q9BVK8 224 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 SDF2L1Q9HCN8 221 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 FKBP11Q9NYL4 201 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 ARHGAP21Q5T5U3 1957 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 RHBDL1O75783 438 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 RAB31Q13636 194 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 GCNT2Q8N0V5 402 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 ELOVL1Q9BW60 279 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 CBLN4Q9NTU7 201 aa10.76□□□□□ -0.69
LIG1-221ENST00000613670 A0A0G2JRQ6 117 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 COX6A1P12074 109 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 KRTDAPP60985 99 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 DPPA3Q6W0C5 159 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 C1QL4Q86Z23 238 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 RAB24Q969Q5 203 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 UHRF2Q96PU4 802 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 HIPK2Q9H2X6 1198 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 FREM1Q5H8C1 2179 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 FAM157AC9JC47 383 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 ACTL6BO94805 426 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 CD55P08174 381 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 MGST1P10620 155 aaKnown RBP10.75□□□□□ -0.69
LIG1-221ENST00000613670 VHLLQ6RSH7 139 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 DBX2Q6ZNG2 339 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 PARD6AQ9NPB6 346 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 POLEQ07864 2286 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 CTXND1A0A1B0GTU2 59 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 SNRPCP09234 159 aaKnown RBP10.75□□□□□ -0.69
LIG1-221ENST00000613670 SLC10A1Q14973 349 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 TWSG1Q9GZX9 223 aa10.75□□□□□ -0.69
LIG1-221ENST00000613670 SPTA1P02549 2419 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 IGLV3-32A0A0A0MS00 114 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 FCGR3BO75015 233 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 NDUFB4O95168 129 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 NTF3P20783 257 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 GCH1P30793 250 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 OTX1P32242 354 aaPredicted RBP10.74□□□□□ -0.69
LIG1-221ENST00000613670 MPLP40238 635 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 MAGEA5P43359 124 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 THBS3P49746 956 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 FOXG1P55316 489 aaPredicted RBP10.74□□□□□ -0.69
LIG1-221ENST00000613670 C6orf15Q6UXA7 325 aaPredicted RBP10.74□□□□□ -0.69
LIG1-221ENST00000613670 SGMS2Q8NHU3 365 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 ABHD5Q8WTS1 349 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 SSMEM1Q8WWF3 244 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 C14orf144Q96I85 54 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 ABHD14BQ96IU4 210 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 PLSCR2Q9NRY7 297 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 IL17BQ9UHF5 180 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 OR5B21A6NL26 309 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 ZNF25P17030 456 aaPredicted RBP10.74□□□□□ -0.69
LIG1-221ENST00000613670 P2RY6Q15077 328 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 TMEM183AQ8IXX5 376 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 GATAD1Q8WUU5 269 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 TRAV38-1A0A0B4J264 116 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 GPR12P47775 334 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 PAX5Q02548 391 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 AESQ08117 197 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 ZNF525Q8N782 197 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 OR8G5Q8NG78 346 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 DDA1Q9BW61 102 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 HES7Q9BYE0 225 aa10.74□□□□□ -0.69
LIG1-221ENST00000613670 WDR61Q9GZS3 305 aaKnown RBP10.74□□□□□ -0.69
LIG1-221ENST00000613670 AQP7O14520 342 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 SLC31A2O15432 143 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 SPINT2O43291 252 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 HRASP01112 189 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 RPP30P78346 268 aaKnown RBP10.73□□□□□ -0.69
LIG1-221ENST00000613670 OR52L2PQ8NGH6 319 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 LYPD6BQ8NI32 183 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 CIB3Q96Q77 187 aaPredicted RBP10.73□□□□□ -0.69
LIG1-221ENST00000613670 SRD5A3Q9H8P0 318 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 PAM16Q9Y3D7 125 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 ZG16O60844 167 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 IGHEP01854 428 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 CNN1P51911 297 aaKnown RBP10.73□□□□□ -0.69
LIG1-221ENST00000613670 NMSQ5H8A3 153 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 BTF3L4Q96K17 158 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 TXN2Q99757 166 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 WDR54Q9H977 334 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 TCFL5Q9UL49 500 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 MPC1Q9Y5U8 109 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 ABCA1O95477 2261 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 TMEM30CPA0ZSE6 113 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 KBTBD11O94819 623 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 MT-CO2P00403 227 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 HOXA6P31267 233 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 Q6ZRM9 215 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 OR1L1Q8NH94 360 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 TBX15Q96SF7 602 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 LOXL2Q9Y4K0 774 aa10.73□□□□□ -0.69
LIG1-221ENST00000613670 GRIFINA4D1Z8 144 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 FOXI3A8MTJ6 420 aaPredicted RBP10.72□□□□□ -0.69
LIG1-221ENST00000613670 J3QT63 122 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 M0R143 59 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 DNPH1O43598 174 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 LYZL6O75951 148 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 OR2H2O95918 312 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms