RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	LRRTM1	Q86UE6	522 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ABHD14B	Q96IU4	210 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	MS4A10	Q96PG2	267 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PARP12	Q9H0J9	701 aa	Known RBP	13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	IFI27L2	Q9H2X8	130 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ISYNA1	Q9NPH2	558 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PLEKHJ1	Q9NW61	149 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RNF150	Q9ULK6	438 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FBXO7	Q9Y3I1	522 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FCN1	O00602	326 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	IGHV3-11	P01762	117 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CD1A	P06126	327 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CT45A6	P0DMU7	189 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CT45A5	P0DMU8	189 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CT45A7	P0DMV0	189 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	NDP	Q00604	133 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	C6orf141	Q5SZD1	244 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	OVCH2	Q7RTZ1	564 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF554	Q86TJ5	538 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	NPB	Q8NG41	125 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	KCNG3	Q8TAE7	436 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MYOZ3	Q8TDC0	251 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	DLX4	Q92988	240 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	HDHD3	Q9BSH5	251 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	FAM103A1	Q9BTL3	118 aa	Known RBP	13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	C8orf4	Q9NR00	106 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SLC23A1	Q9UHI7	598 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF580	Q9UK33	172 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SMAD5-AS1	Q9Y6J3	95 aa		13.64	□□□□□ -0.23
SHKBP1-223	ENST00000600552	RAB29	O14966	203 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	HSPA12A	O43301	675 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CX3CL1	P78423	397 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	HSD17B12	Q53GQ0	312 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SVOP	Q8N4V2	548 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MS4A15	Q8N5U1	240 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	DRAXIN	Q8NBI3	349 aa	Predicted RBP	13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TMEM203	Q969S6	136 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	PLCXD1	Q9NUJ7	323 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	PIPOX	Q9P0Z9	390 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	GAB2	Q9UQC2	676 aa		13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	FOXA2	Q9Y261	457 aa	Predicted RBP	13.63	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LINC01619	G3V211	115 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	RRH	O14718	337 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SNRPB	P14678	240 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SRM	P19623	302 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CEACAM6	P40199	344 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	RUNX1	Q01196	453 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	UNC119	Q13432	240 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MED22	Q15528	200 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	C1orf100	Q5SVJ3	147 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	UNQ5815/PRO19632	Q6UWF5	114 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF429	Q86V71	674 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	PPP1R27	Q86WC6	154 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MINDY2	Q8NBR6	621 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MND1	Q9BWT6	205 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	PLGRKT	Q9HBL7	147 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	OR1A1	Q9P1Q5	309 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	AK3	Q9UIJ7	227 aa		13.62	□□□□□ -0.23
SHKBP1-223	ENST00000600552	IGHV4OR15-8	A0A075B7B6	117 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552		A0A087WW49	117 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552		A0A0A6YYD4	124 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SOCS1	O15524	211 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SOX15	O60248	233 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	NDUFA3	O95167	84 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CDK1	P06493	297 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SPN	P16150	400 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	INSL3	P51460	131 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LY6G6F	Q5SQ64	297 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ARPC1A	Q92747	370 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	C11orf54	Q9H0W9	315 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF355P	Q9NSJ1	428 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	METTL1	Q9UBP6	276 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552	WASHC3	Q9Y3C0	194 aa		13.61	□□□□□ -0.23
SHKBP1-223	ENST00000600552		H0YJW9	148 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	NAPSA	O96009	420 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	HSMCR30	P0CW71	290 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	CPE	P16870	476 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LINC00205	P59089	165 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TPPP2	P59282	170 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	RPS16	P62249	146 aa	Known RBP	13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TMEM267	Q0VDI3	215 aa	Predicted RBP	13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SPHAR	Q15513	63 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ACTBL2	Q562R1	376 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LIPK	Q5VXJ0	399 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	HAPLN4	Q86UW8	402 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LFNG	Q8NES3	379 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	PHYHIP	Q92561	330 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TM2D1	Q9BX74	207 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TOLLIP	Q9H0E2	274 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	FKBP14	Q9NWM8	211 aa		13.6	□□□□□ -0.23
SHKBP1-223	ENST00000600552	OR5H14	A6NHG9	310 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	TMEM14DP	A8MWL7	114 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	BPNT1	O95861	308 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LGALS1	P09382	135 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SCT	P09683	121 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MC5R	P33032	325 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SRSF7	Q16629	238 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	FAM71F2	Q6NXP2	309 aa		13.59	□□□□□ -0.23

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