RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 ST3GAL6Q9Y274 331 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PRELID3BQ9Y3B1 194 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RNF115Q9Y4L5 304 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 KLF2Q9Y5W3 355 aaPredicted RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 AUP1Q9Y679 476 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 C2CD3Q4AC94 2353 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 IGKV1-12A0A0C4DH73 117 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 hCG_38984A0A1B0GV85 526 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RFPL4AA6NLU0 287 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 IFITM5A6NNB3 132 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RFPL4AL1F8VTS6 287 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PHYHO14832 338 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 OGG1O15527 345 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PPIHO43447 177 aaKnown RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PTTG1O95997 202 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 IGKV1D-12P01611 117 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 GYPAP02724 150 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 CFC1BP0CG36 223 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 CFC1P0CG37 223 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RAB4AP20338 218 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 GLRA1P23415 457 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 COL8A2P25067 703 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 DDOSTP39656 456 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PITPNBP48739 271 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 MEOX2P50222 304 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 HTD2P86397 168 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TNFAIP6P98066 277 aaPredicted RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RBM39Q14498 530 aaKnown RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 SCGB2B2Q4G0G5 96 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 SPANXN2Q5MJ10 180 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 WDR86Q86TI4 376 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM17Q86X19 198 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM185AQ8NFB2 350 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 DYNC2LI1Q8TCX1 351 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 LRRC29Q8WV35 223 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 YIPF5Q969M3 257 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 CCL13Q99616 98 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM246Q9BRR3 403 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TRAF4Q9BUZ4 470 aaPredicted RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PARD6GQ9BYG4 376 aaPredicted RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 KRTAP1-5Q9BYS1 174 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 SLC22A4Q9H015 551 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 MMP27Q9H306 513 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 RANBP3Q9H6Z4 567 aaPredicted RBP2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM138Q9NPI0 162 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 TNFRSF19Q9NS68 423 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 OR5V1Q9UGF6 321 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 PEX16Q9Y5Y5 336 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 NBEAL1Q6ZS30 2694 aa2.7□□□□□ -1.98
ZNF540-207ENST00000589285 ZNF816-ZNF321PA0A0X1KG74 233 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SERTM2A0A1B0GWG4 89 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TRDV1A0A1B0GX56 115 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 LEUTXA8MZ59 168 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 RPL36A-HNRNPH2H7BZ11 118 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 LANCL1O43813 399 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SCO1O75880 301 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 STAG3L3P0CL85 134 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ZNF35P13682 527 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 MGMTP16455 207 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 CDK2P24941 298 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 PTAFRP25105 342 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ARL3P36405 182 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 MNDAP41218 407 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 FXYD4P59646 89 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 AESQ08117 197 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 BAMBIQ13145 260 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 RAB11BQ15907 218 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM69Q5SWH9 247 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 AGAP6Q5VW22 663 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 GLT8D1Q68CQ7 371 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SSX9Q7RTT3 188 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TRAPPC6BQ86SZ2 158 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 BIVMQ86UB2 503 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 FAM216BQ8N7L0 139 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 OR5L1Q8NGL2 311 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ARHGAP5-AS1Q96IT6 56 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ZNF75AQ96N20 296 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SSX3Q99909 188 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TMEM59Q9BXS4 323 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SLIRPQ9GZT3 109 aaKnown RBP2.69□□□□□ -1.98
ZNF540-207ENST00000589285 NGBQ9NPG2 151 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 INPP5EQ9NRR6 644 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 MTCH1Q9NZJ7 389 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ZNRD1Q9P1U0 126 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TANC2Q9HCD6 1990 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TEX13DA0A0J9YY54 714 aaPredicted RBP2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SHISA9B4DS77 424 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 TRAPPC2LH3BP13 241 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 DVL1O14640 695 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 XRCC2O43543 280 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SRSF10O75494 262 aaKnown RBP2.69□□□□□ -1.98
ZNF540-207ENST00000589285 UPK1BO75841 260 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 PTBP3O95758 552 aaKnown RBP2.69□□□□□ -1.98
ZNF540-207ENST00000589285 CYB5AP00167 134 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 UCHL1P09936 223 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 COX6B1P14854 86 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 SPNP16150 400 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 RCC1P18754 421 aaPredicted RBP2.69□□□□□ -1.98
ZNF540-207ENST00000589285 ACHEP22303 614 aa2.69□□□□□ -1.98
ZNF540-207ENST00000589285 NFYBP25208 207 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms