RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZNF585BQ52M93 769 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 DEFB108BQ8NET1 73 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 DMBX1Q8NFW5 382 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 CD300LFQ8TDQ1 290 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 CORO2AQ92828 525 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 MARVELD3Q96A59 401 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 DCTN5Q9BTE1 182 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 SLC25A31Q9H0C2 315 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 RNF150Q9ULK6 438 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 ANKHD1Q8IWZ3 2542 aaKnown RBP11.78□□□□□ -0.52
LIG3-205ENST00000585941 ATRXP46100 2492 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 PPIAL4EA0A075B759 164 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 BORCS7-ASMTA0A0B4J1R7 106 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 KBTBD11-OT1A0A1B0GTJ5 212 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 ZNF729A6NN14 1252 aaPredicted RBP11.78□□□□□ -0.52
LIG3-205ENST00000585941 PPIAL4DF5H284 164 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 GYPAP02724 150 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 PPIAL4FP0DN26 164 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 RAB7AP51149 207 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 OR2C3Q8N628 320 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 LINC01560Q8TB33 94 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 PCNPQ8WW12 178 aaKnown RBP11.78□□□□□ -0.52
LIG3-205ENST00000585941 GPR146Q96CH1 333 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 CCL13Q99616 98 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 AGMATQ9BSE5 352 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 C11orf1Q9H5F2 150 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 LINC00574Q9H8X3 128 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 TMEM106BQ9NUM4 274 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 CISD1Q9NZ45 108 aaKnown RBP11.78□□□□□ -0.52
LIG3-205ENST00000585941 CLN8Q9UBY8 286 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 FBXL17Q9UF56 701 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 PSG11Q9UQ72 335 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 GAB2Q9UQC2 676 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 PPIAL4AQ9Y536 164 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 IGHV3-43A0A0B4J1X8 118 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 hADV38S2A0JD32 116 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 CLDN1O95832 211 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 IGKV1-39P01597 117 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 IGKV1D-39P04432 117 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 ROS1P08922 2347 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 IGHV3-43DP0DP04 118 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 GPR12P47775 334 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 LOXL3P58215 753 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 MEF2CQ06413 473 aaPredicted RBP11.78□□□□□ -0.52
LIG3-205ENST00000585941 UBAC2Q8NBM4 344 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 RNF141Q8WVD5 230 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 RAB40CQ96S21 281 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 SDHAF2Q9NX18 166 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 COA4Q9NYJ1 87 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 LPAR3Q9UBY5 353 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 MMP24Q9Y5R2 645 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 SESN1Q9Y6P5 492 aa11.78□□□□□ -0.52
LIG3-205ENST00000585941 USF3Q68DE3 2245 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 FAM90A26D6RGX4 464 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 NDUFA2O43678 99 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 LPAR6P43657 344 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 POLR2GP62487 172 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIG3-205ENST00000585941 MST1LQ2TV78 715 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 CXorf66Q5JRM2 361 aaPredicted RBP11.77□□□□□ -0.53
LIG3-205ENST00000585941 ZNF808Q8N4W9 903 aaPredicted RBP11.77□□□□□ -0.53
LIG3-205ENST00000585941 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.77□□□□□ -0.53
LIG3-205ENST00000585941 OR10A7Q8NGE5 316 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 TCTEX1D2Q8WW35 142 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 LYRM2Q9NU23 88 aaPredicted RBP11.77□□□□□ -0.53
LIG3-205ENST00000585941 TAS2R3Q9NYW6 316 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 ARFGEF3Q5TH69 2177 aa11.77□□□□□ -0.53
LIG3-205ENST00000585941 TMPRSS2O15393 492 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 ST8SIA5O15466 376 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 FGF16O43320 207 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 SSSCA1O60232 199 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 IGKV1-5P01602 117 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 EPHA1P21709 976 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 BAXQ07812 192 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 SWI5Q1ZZU3 235 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 C17orf58Q2M2W7 97 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 ZNF672Q499Z4 452 aaPredicted RBP11.76□□□□□ -0.53
LIG3-205ENST00000585941 RPL7L1Q6DKI1 246 aaKnown RBP11.76□□□□□ -0.53
LIG3-205ENST00000585941 ZCCHC24Q8N2G6 241 aaKnown RBP11.76□□□□□ -0.53
LIG3-205ENST00000585941 FGFRL1Q8N441 504 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 FAM216BQ8N7L0 139 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 NEUROG1Q92886 237 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 TMEM204Q9BSN7 226 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 GFOD1Q9NXC2 390 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 LINC00312Q9Y6C7 94 aa11.76□□□□□ -0.53
LIG3-205ENST00000585941 DIDO1Q9BTC0 2240 aaKnown RBP11.76□□□□□ -0.53
LIG3-205ENST00000585941 IGHV1-69-2A0A0G2JMI3 117 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 A0A0G2JRQ6 117 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 DEFB108AA8MXU0 73 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 FSTL3O95633 263 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 SELLP14151 372 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 RPL23AP62750 156 aaKnown RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 RPL30P62888 115 aaKnown RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 AANATQ16613 207 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 LTC4SQ16873 150 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 Q3ZCU0 254 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 FAM74A1Q5RGS3 127 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 HSD17B13Q7Z5P4 300 aaPredicted RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 SPAG16Q8N0X2 631 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 MUC15Q8N387 334 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 EIF4E3Q8N5X7 224 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms