RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PGLYRP1O75594 196 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-207ENST00000580002 IL5P05113 134 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 DHRS2Q13268 280 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 SLC9A3R2Q15599 337 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 RTN4IP1Q8WWV3 396 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-207ENST00000580002 C9orf170A2RU37 121 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 RGS11O94810 467 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 VAMP1P23763 118 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 HCP5Q6MZN7 132 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 LIN54Q6MZP7 749 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 SLC25A48Q6ZT89 311 aaKnown RBP20.48■□□□□ 0.87
SHMT1-207ENST00000580002 TBC1D26Q86UD7 250 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 CASTOR1Q8WTX7 329 aa20.48■□□□□ 0.87
SHMT1-207ENST00000580002 POLR3KQ9Y2Y1 108 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-207ENST00000580002 A0A1W2PPH5 198 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 DIAPH2-AS1Q14236 149 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 Q3ZCU0 254 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 TMEM128Q5BJH2 165 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 PRSS57Q6UWY2 283 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 ZNF645Q8N7E2 425 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 DRAXINQ8NBI3 349 aaPredicted RBP20.47■□□□□ 0.87
SHMT1-207ENST00000580002 BVESQ8NE79 360 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 EDARADDQ8WWZ3 215 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 TNFRSF14Q92956 283 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 SIRPDQ9H106 197 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 OR51J1Q9H342 316 aa20.47■□□□□ 0.87
SHMT1-207ENST00000580002 A0A087X0M5 115 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 A0A1B0GX30 115 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 CRYM-AS1A6NIL9 109 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 HLA-AP01891 365 aaKnown RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 RPL30P62888 115 aaKnown RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 C2orf68Q2NKX9 166 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 C11orf91Q3C1V1 193 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 LPCAT3Q6P1A2 487 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 VMO1Q7Z5L0 202 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 LYG1Q8N1E2 194 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 CIARTQ8N365 385 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 PNKDQ8N490 385 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 IGHV2-26A0A0B4J1V2 119 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 TEX13DA0A0J9YY54 714 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 A0A1W2PRD5 423 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 A0A1W2PRF3 423 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 A0A1W2PRM7 423 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 J3QR06 171 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 M0R1W7 72 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 MPPED1O15442 326 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 MMP9P14780 707 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 BCAP31P51572 246 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 DVL1P1P54792 670 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 EIF4EBP1Q13541 118 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-207ENST00000580002 LYG2Q86SG7 212 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 TP53RKQ96S44 253 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 ZNF251Q9BRH9 671 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 PCGF1Q9BSM1 259 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 INSIG2Q9Y5U4 225 aa20.46■□□□□ 0.87
SHMT1-207ENST00000580002 GPR12P47775 334 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 ANKRD55Q3KP44 614 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 TMEM30BQ3MIR4 351 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 LY6G6FQ5SQ64 297 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 ZNF626Q68DY1 528 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 UXS1Q8NBZ7 420 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 OR51H1Q8NH63 302 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 ZNF431Q8TF32 576 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-207ENST00000580002 TBX15Q96SF7 602 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 ITPR3Q14573 2671 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 CELSR1Q9NYQ6 3014 aa20.45■□□□□ 0.86
SHMT1-207ENST00000580002 SAA2-SAA4A0A096LPE2 208 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 PRAF2O60831 178 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 SFT2D2O95562 160 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 SAA2P0DJI9 122 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-207ENST00000580002 PRTN3P24158 256 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 LOXL1Q08397 574 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-207ENST00000580002 ZNF486Q96H40 463 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-207ENST00000580002 NAA60Q9H7X0 242 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 METTL8Q9H825 291 aaKnown RBP20.44■□□□□ 0.86
SHMT1-207ENST00000580002 CR1P17927 2039 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 LINC00473A8K010 186 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 ITGB1BP1O14713 200 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 RBP4P02753 201 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 MSMBP08118 114 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 OR5AC1P0C628 307 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 TAS2R31P59538 309 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 LDLRAD2Q5SZI1 272 aa20.44■□□□□ 0.86
SHMT1-207ENST00000580002 RNASEK-C17orf49H0YIS7 233 aa20.43■□□□□ 0.86
SHMT1-207ENST00000580002 CD34P28906 385 aa20.43■□□□□ 0.86
SHMT1-207ENST00000580002 RND3P61587 244 aa20.43■□□□□ 0.86
SHMT1-207ENST00000580002 OR9G1Q8NH87 305 aa20.43■□□□□ 0.86
SHMT1-207ENST00000580002 KPTNQ9Y664 436 aa20.43■□□□□ 0.86
SHMT1-207ENST00000580002 FLNBO75369 2602 aaKnown RBP20.43■□□□□ 0.86
SHMT1-207ENST00000580002 BRWD1-AS2P59051 145 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 PAX8Q06710 450 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 FCN2Q15485 313 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 FAHD2BQ6P2I3 314 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-207ENST00000580002 SGPP2Q8IWX5 399 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 CMTM1Q8IZ96 169 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 KIR3DL3Q8N743 410 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 ZNF596Q8TC21 504 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 CHAC2Q8WUX2 184 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 MSI2Q96DH6 328 aaKnown RBP20.42■□□□□ 0.86
SHMT1-207ENST00000580002 FAHD2AQ96GK7 314 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms