RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MED13LQ71F56 2210 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 CCDC168Q8NDH2 2452 aa8.77□□□□□ -1.01
SS18-213ENST00000579640 CSMD2Q7Z408 3487 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.76□□□□□ -1.011e-7■■■■□ 26.1
SS18-213ENST00000579640 RAB29O14966 203 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 ARPC1BO15143 372 aaKnown RBP8.76□□□□□ -1.01
SS18-213ENST00000579640 SLC31A2O15432 143 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 IGHV3-7P01780 117 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 RLN1P04808 185 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 HOXB4P17483 251 aaPredicted RBP8.76□□□□□ -1.01
SS18-213ENST00000579640 COX7A1P24310 79 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 GNRHRP30968 328 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 GPR12P47775 334 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 TAS2R31P59538 309 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 UBE2MP61081 183 aaKnown RBP8.76□□□□□ -1.01
SS18-213ENST00000579640 ABCA11PQ4W5N1 156 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 PNKDQ8N490 385 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 CCDC71LQ8N9Z2 235 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 OR10X1Q8NGY0 326 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 UPRTQ96BW1 309 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 ALX4Q9H161 411 aaPredicted RBP8.76□□□□□ -1.01
SS18-213ENST00000579640 MMP28Q9H239 520 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 C5orf66Q9H5L9 145 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 C7orf69Q9H7B7 122 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 CCL28Q9NRJ3 127 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 KCNS2Q9ULS6 477 aa8.76□□□□□ -1.01
SS18-213ENST00000579640 TRAV6A0A075B6T7 132 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 INMT-MINDY4F8WBC2 141 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 IGLV1-47P01700 117 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 SPNP16150 400 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 MECP2P51608 486 aaKnown RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 UBE2E1P51965 193 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 RND3P61587 244 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 BAMBIQ13145 260 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 HLA-DRB5Q30154 266 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 UTF1Q5T230 341 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 ZNF626Q68DY1 528 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 HCP5Q6MZN7 132 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 FAM71F2Q6NXP2 309 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 FAHD2BQ6P2I3 314 aaPredicted RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 C11orf88Q6PI97 169 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 LDLRAD3Q86YD5 345 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 LYG1Q8N1E2 194 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 BVESQ8NE79 360 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 FAHD2AQ96GK7 314 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 RNF150Q9ULK6 438 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 CREBBPQ92793 2442 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 WNK2Q9Y3S1 2297 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 A0A1W2PPE3 182 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 ODF3BA8MYP8 253 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 RNASEK-C17orf49H0YIS7 233 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 HSD17B6O14756 317 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 SMAD7O15105 426 aaKnown RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 PEX14O75381 377 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 DHFRP00374 187 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 ZNF16P17020 682 aaPredicted RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 ZNF137PP52743 207 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 ZNF818PQ6ZRF7 136 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 TMED4Q7Z7H5 227 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 SLC25A42Q86VD7 318 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 CIARTQ8N365 385 aaPredicted RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 ABHD14BQ96IU4 210 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 S1PR3Q99500 378 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 RTBDNQ9BSG5 229 aaPredicted RBP8.75□□□□□ -1.01
SS18-213ENST00000579640 SLC2A9Q9NRM0 540 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 FLVCR2Q9UPI3 526 aa8.75□□□□□ -1.01
SS18-213ENST00000579640 SAA2-SAA4A0A096LPE2 208 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 RNF212BA8MTL3 300 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 PRAF2O60831 178 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 IGLV2-14P01704 120 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 ARG1P05089 322 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 SAA2P0DJI9 122 aaPredicted RBP8.74□□□□□ -1.01
SS18-213ENST00000579640 DLX1P56177 255 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 PIGPP57054 158 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 KLRD1Q13241 179 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 MINOS1Q5TGZ0 78 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 SPNS3Q6ZMD2 512 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 ZNF66Q6ZN08 573 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 ODF3L1Q8IXM7 274 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 DRAM1Q8N682 238 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 TEX29Q8N6K0 151 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 OR4P4Q8NGL7 312 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 LHX4Q969G2 390 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 SDHAF2Q9NX18 166 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 TBL2Q9Y4P3 447 aaKnown RBP8.74□□□□□ -1.01
SS18-213ENST00000579640 MINOS1-NBL1R4GNA1 71 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 VPS13CQ709C8 3753 aa8.74□□□□□ -1.01
SS18-213ENST00000579640 LEUTXA8MZ59 168 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 BUB1B-PAK6H3BSN5 160 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 B3GALNT1O75752 331 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 IL5P05113 134 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 PI3P19957 117 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 HTR1DP28221 377 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 CEACAM3P40198 252 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 LGALS4P56470 323 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 DHODHQ02127 395 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 CATR1Q13166 79 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 MIDNQ504T8 468 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 PHLDA2Q53GA4 152 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 TMEM128Q5BJH2 165 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms