RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SAA2P0DJI9 122 aaPredicted RBP11.65□□□□□ -0.54
VPS53-218ENST00000575207 ZNF20P17024 532 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 ALKBH1Q13686 389 aaKnown RBP11.65□□□□□ -0.54
VPS53-218ENST00000575207 PIGYQ3MUY2 71 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 MORN2Q502X0 79 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 CD300LFQ8TDQ1 290 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 FGGYQ96C11 551 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 MRPS24Q96EL2 167 aaKnown RBP11.65□□□□□ -0.54
VPS53-218ENST00000575207 RNF5Q99942 180 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 ZNF581Q9P0T4 197 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 OR5H14A6NHG9 310 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 FAM223BA6NKX1 122 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 H7C2Y5 167 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 AIPO00170 330 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 GGCTO75223 188 aaKnown RBP11.64□□□□□ -0.55
VPS53-218ENST00000575207 OR2C1O95371 312 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 HBZP02008 142 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 MT-ND2P03891 347 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 MT-ND4P03905 459 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 RHOGP84095 191 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 ATP5G2Q06055 141 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 Q6ZSN1 163 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 ZNF767PQ75MW2 155 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 FAM223AQ8IWN6 122 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 ADAD2Q8NCV1 583 aaKnown RBP11.64□□□□□ -0.55
VPS53-218ENST00000575207 OR1L1Q8NH94 360 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 TMEM163Q8TC26 289 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 CNN2Q99439 309 aaKnown RBP11.64□□□□□ -0.55
VPS53-218ENST00000575207 AKIP1Q9NQ31 210 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 OR2S2Q9NQN1 319 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 ENOPH1Q9UHY7 261 aa11.64□□□□□ -0.55
VPS53-218ENST00000575207 IGHV4-28A0A0C4DH34 117 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 FAM90A23PA8MXZ1 464 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 SULT1B1O43704 296 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 GMNNO75496 209 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 C8orf88P0DMB2 117 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 MC5RP33032 325 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 TMEM187Q14656 261 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 ZSCAN26Q16670 478 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 FAM209BQ5JX69 171 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 C6orf141Q5SZD1 244 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 ZNF497Q6ZNH5 498 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 HOPXQ9BPY8 73 aaPredicted RBP11.63□□□□□ -0.55
VPS53-218ENST00000575207 ALG8Q9BVK2 526 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 RNF167Q9H6Y7 350 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 WASHC3Q9Y3C0 194 aa11.63□□□□□ -0.55
VPS53-218ENST00000575207 ZNF320A2RRD8 509 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 CCDC182A6NF36 153 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 H0YJW9 148 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 FAM229AH3BQW9 127 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 NDUFAB1O14561 156 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 TSPAN4O14817 238 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 OR7C1O76099 320 aaPredicted RBP11.62□□□□□ -0.55
VPS53-218ENST00000575207 SPDEFO95238 335 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 HMGN1P05114 100 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 UBCP0CG48 685 aaKnown RBP11.62□□□□□ -0.55
VPS53-218ENST00000575207 T-ENOLP0DO92 83 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 ADARB1P78563 741 aaKnown RBP11.62□□□□□ -0.55
VPS53-218ENST00000575207 GNMTQ14749 295 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 C12orf74Q32Q52 190 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 SETD9Q8NE22 299 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 OR13C9Q8NGT0 318 aa11.62□□□□□ -0.55
VPS53-218ENST00000575207 FAT3Q8TDW7 4589 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 ELOA3CA0A087WX78 387 aaPredicted RBP11.61□□□□□ -0.55
VPS53-218ENST00000575207 KRT8P05787 483 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 PPP1R8Q12972 351 aaKnown RBP11.61□□□□□ -0.55
VPS53-218ENST00000575207 GINS1Q14691 196 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 C6orf183Q5T699 404 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 SYT6Q5T7P8 510 aaPredicted RBP11.61□□□□□ -0.55
VPS53-218ENST00000575207 OR4A47Q6IF82 309 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 FAM71F2Q6NXP2 309 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 CD300LDQ6UXZ3 194 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 GLDNQ6ZMI3 551 aaPredicted RBP11.61□□□□□ -0.55
VPS53-218ENST00000575207 SERPINA12Q8IW75 414 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 SLC35F2Q8IXU6 374 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 OR10AC1Q8NH08 325 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 NEK7Q8TDX7 302 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 MARC2Q969Z3 335 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 TSNAXQ99598 290 aaKnown RBP11.61□□□□□ -0.55
VPS53-218ENST00000575207 NIPSNAP1Q9BPW8 284 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 SULT4A1Q9BR01 284 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 C5orf66Q9H5L9 145 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 IFT22Q9H7X7 185 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 GORASP2Q9H8Y8 452 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 TRAPPC2LQ9UL33 140 aa11.61□□□□□ -0.55
VPS53-218ENST00000575207 TRBV9A0A0B4J1U6 114 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 NBDYA0A0U1RRE5 68 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 FAM90A7PA6NKC0 464 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 ZNF670-ZNF695F2Z2N8 137 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 SMR3BP02814 79 aaPredicted RBP11.6□□□□□ -0.55
VPS53-218ENST00000575207 APELAP0DMC3 54 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 CT45A6P0DMU7 189 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 CT45A5P0DMU8 189 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 CT45A7P0DMV0 189 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 MIFP14174 115 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 EPHA2P29317 976 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 PPP1CCP36873 323 aaKnown RBP11.6□□□□□ -0.55
VPS53-218ENST00000575207 FAM3BP58499 235 aaPredicted RBP11.6□□□□□ -0.55
VPS53-218ENST00000575207 KISS1Q15726 138 aa11.6□□□□□ -0.55
VPS53-218ENST00000575207 FAM106AQ4KMX7 169 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms