RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SEMA6DQ8NFY4 1073 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 SLC26A10Q8NG04 563 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 OR6N1Q8NGY5 312 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 OSR1Q8TAX0 266 aaPredicted RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 FAM57AQ8TBR7 257 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 NOL4LQ96MY1 436 aaPredicted RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 MED18Q9BUE0 208 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 CDCA4Q9BXL8 241 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 TMEM138Q9NPI0 162 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 GSKIPQ9P0R6 139 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 KCNIP3Q9Y2W7 256 aa5.66□□□□□ -1.5
VPS53-217ENST00000575100 LSM2Q9Y333 95 aaKnown RBP5.66□□□□□ -1.5
VPS53-217ENST00000575100 PHF3Q92576 2039 aaKnown RBP5.65□□□□□ -1.5
VPS53-217ENST00000575100 SETD2Q9BYW2 2564 aaPredicted RBP5.65□□□□□ -1.5
VPS53-217ENST00000575100 MED12LQ86YW9 2145 aa5.65□□□□□ -1.5
VPS53-217ENST00000575100 FREM1Q5H8C1 2179 aa5.65□□□□□ -1.5
VPS53-217ENST00000575100 A0A087WXM4 84 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 GAGE12JA6NER3 117 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 ZNF724A8MTY0 619 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 SS18L1O75177 396 aaPredicted RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 MRPL33O75394 65 aaKnown RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 TNFSF13O75888 250 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 RAB36O95755 333 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 CD5P06127 495 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 ANOS1P23352 680 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 ERP29P30040 261 aaKnown RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 RBP2P50120 134 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 ZNF133P52736 654 aaPredicted RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 GP2P55259 537 aaKnown RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 HILS1P60008 231 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 TLE4Q04727 773 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 AESQ08117 197 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 TRIQKQ629K1 86 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 Q6ZSV7 163 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 Q6ZVQ6 151 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 C11orf40Q8WZ69 217 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 NABP1Q96AH0 204 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 CREB3L1Q96BA8 519 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 TMEM56Q96MV1 263 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 RBP7Q96R05 134 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 ATF6BQ99941 703 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 MRPS26Q9BYN8 205 aaKnown RBP5.65□□□□□ -1.51
VPS53-217ENST00000575100 BARHL1Q9BZE3 327 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 OR2W1Q9Y3N9 320 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 TMEM56-RWDD3S4R434 201 aa5.65□□□□□ -1.51
VPS53-217ENST00000575100 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 ZNF503-AS2A6NEH8 195 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 H3BMQ9 156 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ZNF593O00488 134 aaPredicted RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 JTBO76095 146 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 TIMP3P35625 211 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 IDH3GP51553 393 aaPredicted RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 CRYBA4P53673 196 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 MLLT11Q13015 90 aaPredicted RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 GNMTQ14749 295 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 RAB35Q15286 201 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 POU2AF1Q16633 256 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 CEACAM16Q2WEN9 425 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 C10orf128Q5T292 105 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 CDC20BQ86Y33 519 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 CNEP1R1Q8N9A8 125 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 HSD17B11Q8NBQ5 300 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 OR10W1Q8NGF6 305 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 GMPPAQ96IJ6 420 aaPredicted RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 GGACTQ9BVM4 153 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 OR52A1Q9UKL2 312 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ELF5Q9UKW6 265 aaPredicted RBP5.64□□□□□ -1.51
VPS53-217ENST00000575100 LHFPL6Q9Y693 200 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 CELSR1Q9NYQ6 3014 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 DCHS2Q6V1P9 2916 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ANKRD20A5PA0PJZ0 165 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 SNURFLB1AK76 121 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 PHYHO14832 338 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 SCO1O75880 301 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 SULT1C4O75897 302 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 HBE1P02100 147 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 PATE4P0C8F1 98 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ALOX5APP20292 161 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 OR12D2P58182 307 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 CD300CQ08708 224 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 TRAM1Q15629 374 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 RNF212Q495C1 297 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 PDZD11Q5EBL8 140 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ZNF684Q5T5D7 378 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 TFAP2EQ6VUC0 442 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ACBD7Q8N6N7 88 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ZFP41Q8N8Y5 198 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 OTOSQ8NHW6 89 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 STARD4Q96DR4 205 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 ZNF224Q9NZL3 707 aa5.64□□□□□ -1.51
VPS53-217ENST00000575100 DOCK7Q96N67 2140 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 MTORP42345 2549 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 PNMA8CA0A1B0GUJ8 204 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 DAPL1A0PJW8 107 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 J3QLI3 93 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 K7EP13 123 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 RER1O15258 196 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 HPGDSO60760 199 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 CGAP01215 116 aa5.63□□□□□ -1.51
VPS53-217ENST00000575100 GABRA1P14867 456 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms