RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 FER1L6Q2WGJ9 1857 aa2.56□□□□□ -2
NUP88-209ENST00000574855 A0A0U1RQV1 116 aa2.56□□□□□ -2
NUP88-209ENST00000574855 TEX48A0A1B0GUV7 120 aa2.56□□□□□ -2
NUP88-209ENST00000574855 A0A1B0GXF2 115 aa2.56□□□□□ -2
NUP88-209ENST00000574855 PQLC2LA1A4F0 135 aa2.56□□□□□ -2
NUP88-209ENST00000574855 MAP1LC3B2A6NCE7 125 aa2.56□□□□□ -2
NUP88-209ENST00000574855 C8orf87E5RJ46 101 aa2.56□□□□□ -2
NUP88-209ENST00000574855 K7EQS6 105 aa2.56□□□□□ -2
NUP88-209ENST00000574855 FAAHO00519 579 aa2.56□□□□□ -2
NUP88-209ENST00000574855 PIRO00625 290 aa2.56□□□□□ -2
NUP88-209ENST00000574855 COPEO14579 308 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CCDC22O60826 627 aa2.56□□□□□ -2
NUP88-209ENST00000574855 EDF1O60869 148 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 SPAG7O75391 227 aa2.56□□□□□ -2
NUP88-209ENST00000574855 GCM2O75603 506 aaPredicted RBP2.56□□□□□ -2
NUP88-209ENST00000574855 YIF1AO95070 293 aa2.56□□□□□ -2
NUP88-209ENST00000574855 PTHP01270 115 aa2.56□□□□□ -2
NUP88-209ENST00000574855 IGHV3-13P01766 116 aa2.56□□□□□ -2
NUP88-209ENST00000574855 IGHG1P01857 330 aa2.56□□□□□ -2
NUP88-209ENST00000574855 TTRP02766 147 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SNRPCP09234 159 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 OR5G3P0C626 314 aa2.56□□□□□ -2
NUP88-209ENST00000574855 ZNF286BP0CG31 522 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SMIM10L2AP0DMW4 78 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SMIM10L2BP0DMW5 78 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR5H8P0DN80 308 aa2.56□□□□□ -2
NUP88-209ENST00000574855 GPX2P18283 190 aa2.56□□□□□ -2
NUP88-209ENST00000574855 AZU1P20160 251 aa2.56□□□□□ -2
NUP88-209ENST00000574855 BTCP35070 178 aa2.56□□□□□ -2
NUP88-209ENST00000574855 RCVRNP35243 200 aa2.56□□□□□ -2
NUP88-209ENST00000574855 LGALS7P47929 136 aa2.56□□□□□ -2
NUP88-209ENST00000574855 RAB13P51153 203 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CKS1BP61024 79 aa2.56□□□□□ -2
NUP88-209ENST00000574855 HSPE1P61604 102 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 PRR3P79522 188 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 PAX8Q06710 450 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CCL14Q16627 93 aa2.56□□□□□ -2
NUP88-209ENST00000574855 N4BP2L1Q5TBK1 243 aaPredicted RBP2.56□□□□□ -2
NUP88-209ENST00000574855 SPATA31B1PQ5VZV4 182 aa2.56□□□□□ -2
NUP88-209ENST00000574855 C11orf71Q6IPW1 123 aa2.56□□□□□ -2
NUP88-209ENST00000574855 LPCAT3Q6P1A2 487 aa2.56□□□□□ -2
NUP88-209ENST00000574855 PPP1R27Q86WC6 154 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CTAGE3PQ8IX95 158 aa2.56□□□□□ -2
NUP88-209ENST00000574855 C9orf40Q8IXQ3 194 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OSR2Q8N2R0 312 aa2.56□□□□□ -2
NUP88-209ENST00000574855 MUC15Q8N387 334 aa2.56□□□□□ -2
NUP88-209ENST00000574855 ZNF439Q8NDP4 499 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR4M1Q8NGD0 313 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR10AD1Q8NGE0 317 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR51A2Q8NGJ7 313 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR51S1Q8NGJ8 323 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR10G7Q8NGN6 311 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR2K2Q8NGT1 345 aa2.56□□□□□ -2
NUP88-209ENST00000574855 OR1S1Q8NH92 325 aa2.56□□□□□ -2
NUP88-209ENST00000574855 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.56□□□□□ -2
NUP88-209ENST00000574855 IL22RA2Q969J5 263 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SLC45A3Q96JT2 553 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CDX2Q99626 313 aaPredicted RBP2.56□□□□□ -2
NUP88-209ENST00000574855 VPS25Q9BRG1 176 aa2.56□□□□□ -2
NUP88-209ENST00000574855 C1orf50Q9BV19 199 aa2.56□□□□□ -2
NUP88-209ENST00000574855 CCDC32Q9BV29 185 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SUCNR1Q9BXA5 334 aa2.56□□□□□ -2
NUP88-209ENST00000574855 RSPO3Q9BXY4 272 aaPredicted RBP2.56□□□□□ -2
NUP88-209ENST00000574855 SELENOIQ9C0D9 397 aa2.56□□□□□ -2
NUP88-209ENST00000574855 MAP1LC3BQ9GZQ8 125 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SLIRPQ9GZT3 109 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 RNASE7Q9H1E1 156 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 SAR1AQ9NR31 198 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SPANXA1Q9NS26 97 aa2.56□□□□□ -2
NUP88-209ENST00000574855 XCL2Q9UBD3 114 aa2.56□□□□□ -2
NUP88-209ENST00000574855 RPL26L1Q9UNX3 145 aaKnown RBP2.56□□□□□ -2
NUP88-209ENST00000574855 BTRCQ9Y297 605 aa2.56□□□□□ -2
NUP88-209ENST00000574855 WSB1Q9Y6I7 421 aa2.56□□□□□ -2
NUP88-209ENST00000574855 SSC5DA1L4H1 1573 aa2.56□□□□□ -2
NUP88-209ENST00000574855 A0A0B4J2A0 478 aa2.55□□□□□ -2
NUP88-209ENST00000574855 IGHV3-38A0A0C4DH36 116 aa2.55□□□□□ -2
NUP88-209ENST00000574855 FAM236DA0A1B0GTK5 79 aa2.55□□□□□ -2
NUP88-209ENST00000574855 A0A1W2PPR1 153 aa2.55□□□□□ -2
NUP88-209ENST00000574855 A0A1W2PRE2 83 aa2.55□□□□□ -2
NUP88-209ENST00000574855 EEF1E1-BLOC1S5C9J1V9 151 aa2.55□□□□□ -2
NUP88-209ENST00000574855 K7EQG2 157 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SLC17A3O00476 420 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SLC17A2O00624 439 aa2.55□□□□□ -2
NUP88-209ENST00000574855 XKRYO14609 159 aa2.55□□□□□ -2
NUP88-209ENST00000574855 EEF1E1O43324 174 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 ZNF207O43670 478 aaKnown RBP2.55□□□□□ -2
NUP88-209ENST00000574855 PFDN1O60925 122 aa2.55□□□□□ -2
NUP88-209ENST00000574855 RDH16O75452 317 aa2.55□□□□□ -2
NUP88-209ENST00000574855 C6orf47O95873 294 aa2.55□□□□□ -2
NUP88-209ENST00000574855 EPPINO95925 133 aa2.55□□□□□ -2
NUP88-209ENST00000574855 IFNGP01579 166 aa2.55□□□□□ -2
NUP88-209ENST00000574855 C1QCP02747 245 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MMP7P09237 267 aaPredicted RBP2.55□□□□□ -2
NUP88-209ENST00000574855 CT45A10P0DMU9 189 aa2.55□□□□□ -2
NUP88-209ENST00000574855 FAM236CP0DP71 79 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SPNP16150 400 aa2.55□□□□□ -2
NUP88-209ENST00000574855 MYL9P24844 172 aa2.55□□□□□ -2
NUP88-209ENST00000574855 PRSS3P35030 304 aa2.55□□□□□ -2
NUP88-209ENST00000574855 SPRP35270 261 aaPredicted RBP2.55□□□□□ -2
NUP88-209ENST00000574855 DRD3P35462 400 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms