RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TMEM187Q14656 261 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 CLEC12BQ2HXU8 276 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 ZNF718Q3SXZ3 478 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 OGFRL1Q5TC84 451 aaPredicted RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 RASSF6Q6ZTQ3 369 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 CCDC121Q6ZUS5 278 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 MRPL52Q86TS9 123 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 ZNF383Q8NA42 475 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 WFDC11Q8NEX6 87 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 CANT1Q8WVQ1 401 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 TCTEX1D2Q8WW35 142 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 TMED6Q8WW62 240 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 C22orf15Q8WYQ4 148 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 C18orf12Q96KH6 178 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 RCHY1Q96PM5 261 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 PRRT1Q99946 306 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 MRPS26Q9BYN8 205 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 OR52D1Q9H346 318 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 PLGRKTQ9HBL7 147 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 NOX3Q9HBY0 568 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 DYNLRB1Q9NP97 96 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 SDHAF2Q9NX18 166 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 POLR1DQ9Y2S0 133 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 RPL36Q9Y3U8 105 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 SETD2Q9BYW2 2564 aaPredicted RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 TRAV8-7A0A075B6U6 113 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 IGLV5-52A0A0A0MRZ9 124 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 A0A1B0GVI7 797 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 C5orf49A4QMS7 147 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ARRDC5A6NEK1 342 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 M0R233 179 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ACOT8O14734 319 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 HPGDSO60760 199 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PPP1R3DO95685 299 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 HLA-AP01891 365 aaKnown RBP4.9□□□□□ -1.63
VPS53-212ENST00000572259 ACSM4P0C7M7 580 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PATE4P0C8F1 98 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 SLC2A2P11168 524 aaPredicted RBP4.9□□□□□ -1.63
VPS53-212ENST00000572259 SLC25A16P16260 332 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ZNF823P16415 610 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ZNF32P17041 273 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 SERPINA2P20848 420 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PPOXP50336 477 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PDLIM4P50479 330 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 HNRNPA3P51991 378 aaKnown RBP4.9□□□□□ -1.63
VPS53-212ENST00000572259 PSG4Q00888 419 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 FMODQ06828 376 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 AQP6Q13520 282 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 FHL1Q13642 323 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 MESTQ5EB52 335 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PABPC1L2AQ5JQF8 200 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 C1orf146Q5VVC0 180 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 C11orf71Q6IPW1 123 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ADAMTSL5Q6ZMM2 481 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ZNF620Q6ZNG0 422 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 FOXL2NBQ6ZUU3 175 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 USP43Q70EL4 1123 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ZFP82Q8N141 532 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 STPG2Q8N412 459 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 CLDN22Q8N7P3 220 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 AQP11Q8NBQ7 271 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR2T33Q8NG76 320 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR10G2Q8NGC3 310 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR52E2Q8NGJ4 325 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR5L1Q8NGL2 311 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR2T4Q8NH00 348 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR4K13Q8NH42 304 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR5B3Q8NH48 314 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 SYNPRQ8TBG9 265 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PYDC1Q8WXC3 89 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 DNAJC9Q8WXX5 260 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 AP3S1Q92572 193 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 RAB3CQ96E17 227 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR8B4Q96RC9 309 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 TSSK6Q9BXA6 273 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 BARHL1Q9BZE3 327 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 OR2H1Q9GZK4 316 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 PPDPFQ9H3Y8 114 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 ESM1Q9NQ30 184 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 SPANXB1Q9NS25 103 aaPredicted RBP4.9□□□□□ -1.63
VPS53-212ENST00000572259 C19orf12Q9NSK7 152 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 KLHL21Q9UJP4 597 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 POMPQ9Y244 141 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 VPS13CQ709C8 3753 aa4.9□□□□□ -1.63
VPS53-212ENST00000572259 NIPBLQ6KC79 2804 aaeCLIP4.89□□□□□ -1.63
VPS53-212ENST00000572259 IGLV9-49A0A0B4J1Y8 123 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 TCRBV3S1A0A5B6 114 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 OR6C6A6NF89 314 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 RIIAD1A6NNX1 92 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 LYRM9A8MSI8 78 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 RNF212BA8MTL3 300 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 H3BSA7 217 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 H7C1C5 153 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 MRPS12O15235 138 aaKnown RBP4.89□□□□□ -1.63
VPS53-212ENST00000572259 MAGEB4O15481 346 aaPredicted RBP4.89□□□□□ -1.63
VPS53-212ENST00000572259 FKBP6O75344 327 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 CLIC3O95833 236 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 IGHV4-39P01824 125 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 CDK1P06493 297 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 MMP7P09237 267 aaPredicted RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms