RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ST3GAL6Q9Y274 331 aa8.5□□□□□ -1.05
VPS53-207ENST00000570510 SHISA3A0PJX4 238 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 TMEM127O75204 238 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 IGLV1-40P01703 118 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 IGHV3-11P01762 117 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 PPIFP30405 207 aaKnown RBP8.49□□□□□ -1.05
VPS53-207ENST00000570510 HSD17B12Q53GQ0 312 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 LCN12Q6JVE5 192 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 TRAT1Q6PIZ9 186 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 CD200R1LQ6Q8B3 271 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 OR52M1Q8NGK5 317 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 OR5D18Q8NGL1 313 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 OR13A1Q8NGR1 328 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 MRGPRDQ8TDS7 321 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 RFT1Q96AA3 541 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 CNBD2Q96M20 576 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 SPACA5Q96QH8 159 aa8.49□□□□□ -1.05
VPS53-207ENST00000570510 RCC2Q9P258 522 aaKnown RBP8.49□□□□□ -1.05
VPS53-207ENST00000570510 KLK5Q9Y337 293 aaPredicted RBP8.49□□□□□ -1.05
VPS53-207ENST00000570510 RRP15Q9Y3B9 282 aaKnown RBP8.49□□□□□ -1.05
VPS53-207ENST00000570510 TRAV8-7A0A075B6U6 113 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 TRAV1-2A0A0B4J238 106 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 TRAV24A0A0B4J272 114 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 A0A1W2PN81 502 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 ATP6V0E1O15342 81 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 TXNL1O43396 289 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 DEDDO75618 318 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 TPPPO94811 219 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 HTR3BO95264 441 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 CGB3P0DN86 165 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 CGB7P0DN87 165 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 CHRNA7P36544 502 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 ECSCRQ19T08 205 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 PAN3Q58A45 887 aaKnown RBP8.48□□□□□ -1.05
VPS53-207ENST00000570510 UBE2UQ5VVX9 321 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 GAPTQ8N292 157 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 JAGN1Q8N5M9 183 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 C8orf31Q8N9H6 132 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 OR6M1Q8NGM8 313 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 KCNG3Q8TAE7 436 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 ABHD5Q8WTS1 349 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 RTN4IP1Q8WWV3 396 aaPredicted RBP8.48□□□□□ -1.05
VPS53-207ENST00000570510 KCTD12Q96CX2 325 aaKnown RBP8.48□□□□□ -1.05
VPS53-207ENST00000570510 CCDC90BQ9GZT6 254 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 FAM192AQ9GZU8 254 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 PLEKHA3Q9HB20 300 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 ING4Q9UNL4 249 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 PLECQ15149 4684 aaKnown RBP8.48□□□□□ -1.05
VPS53-207ENST00000570510 TNCP24821 2201 aa8.48□□□□□ -1.05
VPS53-207ENST00000570510 ZNF736B4DX44 427 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 NPIPB11E5RHQ5 1161 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 SLC22A1O15245 554 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 ORC5O43913 435 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 OR7C1O76099 320 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 RGS11O94810 467 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 FUT3P21217 361 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 KCTD21Q4G0X4 260 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 RSBN1Q5VWQ0 802 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 LIPKQ5VXJ0 399 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 STEAP3Q658P3 488 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 AWAT2Q6E213 333 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 GLIPR1L1Q6UWM5 242 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 CEACAM19Q7Z692 300 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 LRRTM1Q86UE6 522 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 ZFP41Q8N8Y5 198 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 OR13C5Q8NGS8 318 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 CASTOR1Q8WTX7 329 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 NR1H4Q96RI1 486 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 ZNF251Q9BRH9 671 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 CENPOQ9BU64 300 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 DPCDQ9BVM2 203 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 RIMS4Q9H426 269 aaPredicted RBP8.47□□□□□ -1.05
VPS53-207ENST00000570510 NDUFB11Q9NX14 153 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 A3GALT2U3KPV4 340 aa8.47□□□□□ -1.05
VPS53-207ENST00000570510 TRDV1A0A1B0GX56 115 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 TMEM30CPA0ZSE6 113 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 MCRIP1C9JLW8 97 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 SDCBPO00560 298 aaPredicted RBP8.46□□□□□ -1.06
VPS53-207ENST00000570510 SLC17A2O00624 439 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 PDCD5O14737 125 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 CDRT1O95170 752 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 MAS1P04201 325 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 ZP3P21754 424 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 FGF9P31371 208 aaPredicted RBP8.46□□□□□ -1.06
VPS53-207ENST00000570510 SSTR5P35346 364 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 CD81P60033 236 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 TMEM267Q0VDI3 215 aaPredicted RBP8.46□□□□□ -1.06
VPS53-207ENST00000570510 SLC22A6Q4U2R8 563 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 PYHIN1Q6K0P9 492 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 LIN54Q6MZP7 749 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 Q8N402 240 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 SUMF2Q8NBJ7 301 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 TMEM104Q8NE00 496 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 Q96M66 194 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 TM2D1Q9BX74 207 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 SLC2A8Q9NY64 477 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 ETAA1Q9NY74 926 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 MGAT4AQ9UM21 535 aa8.46□□□□□ -1.06
VPS53-207ENST00000570510 FOXA2Q9Y261 457 aaPredicted RBP8.46□□□□□ -1.06
VPS53-207ENST00000570510 PNMA8CA0A1B0GUJ8 204 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms