RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 HTR3BO95264 441 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 MC5RP33032 325 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 ADARB1P78563 741 aaKnown RBP13.37□□□□□ -0.27
CLK3-227ENST00000570296 PSG5Q15238 335 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 FAM98BQ52LJ0 330 aaKnown RBP13.37□□□□□ -0.27
CLK3-227ENST00000570296 ASCL4Q6XD76 172 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 GID4Q8IVV7 300 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 DEFB107AQ8IZN7 70 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 OR5D14Q8NGL3 314 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 ENOPH1Q9UHY7 261 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 JPT1Q9UK76 154 aa13.37□□□□□ -0.27
CLK3-227ENST00000570296 IGLL5B9A064 214 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 GABRPO00591 440 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 GEMIN2O14893 280 aaKnown RBP13.36□□□□□ -0.27
CLK3-227ENST00000570296 ATP5HO75947 161 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 LGALS7P47929 136 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 RASSF2P50749 326 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 GNMTQ14749 295 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 MPV17LQ2QL34 196 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 TM4SF20Q53R12 229 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 LY6G6FQ5SQ64 297 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 ATAD3CQ5T2N8 411 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 ZNF57Q68EA5 555 aaPredicted RBP13.36□□□□□ -0.27
CLK3-227ENST00000570296 Q8N1X5 172 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 OR10H4Q8NGA5 316 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 OR52N1Q8NH53 320 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 FRRS1LQ9P0K9 344 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 ING4Q9UNL4 249 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 WASHC3Q9Y3C0 194 aa13.36□□□□□ -0.27
CLK3-227ENST00000570296 EBAG9O00559 213 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 SPDEFO95238 335 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 CST1P01037 141 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 T-ENOLP0DO92 83 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 ANXA8P13928 327 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 PPP1CCP36873 323 aaKnown RBP13.35□□□□□ -0.27
CLK3-227ENST00000570296 CRISP1P54107 249 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 RPS16P62249 146 aaKnown RBP13.35□□□□□ -0.27
CLK3-227ENST00000570296 TP53I3Q53FA7 332 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 LPCAT4Q643R3 524 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 FDX2Q6P4F2 183 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 SERPINA12Q8IW75 414 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 THRSPQ92748 146 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 GPER1Q99527 375 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 FAM192AQ9GZU8 254 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 C11orf68Q9H3H3 251 aaKnown RBP13.35□□□□□ -0.27
CLK3-227ENST00000570296 IL36GQ9NZH8 169 aa13.35□□□□□ -0.27
CLK3-227ENST00000570296 WARS2Q9UGM6 360 aaKnown RBP13.35□□□□□ -0.27
CLK3-227ENST00000570296 H0YJW9 148 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 H7C2Y5 167 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 GYG2O15488 501 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 YPEL1O60688 119 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 CT45A6P0DMU7 189 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 CT45A5P0DMU8 189 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 CT45A7P0DMV0 189 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 EDN2P20800 178 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 CCR9P51686 369 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 EFNB1P98172 346 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 DNAL1Q4LDG9 190 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 ARHGAP24Q8N264 748 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 GAPTQ8N292 157 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 OR52L2PQ8NGH6 319 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 OR4K15Q8NH41 348 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 TMEM163Q8TC26 289 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 YPEL2Q96QA6 119 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 TAF9BQ9HBM6 251 aa13.34□□□□□ -0.27
CLK3-227ENST00000570296 LGALS9O00182 355 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 RCC1P18754 421 aaPredicted RBP13.33□□□□□ -0.28
CLK3-227ENST00000570296 EPHA2P29317 976 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 MFAP2P55001 183 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 NANOS3P60323 173 aaKnown RBP13.33□□□□□ -0.28
CLK3-227ENST00000570296 C6orf141Q5SZD1 244 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 PARP16Q8N5Y8 322 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 OR2AK2Q8NG84 335 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 OR5AN1Q8NGI8 311 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 TSNAXQ99598 290 aaKnown RBP13.33□□□□□ -0.28
CLK3-227ENST00000570296 ALG8Q9BVK2 526 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 IFI27L2Q9H2X8 130 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 SPACA1Q9HBV2 294 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 COA4Q9NYJ1 87 aa13.33□□□□□ -0.28
CLK3-227ENST00000570296 C11orf94C9JXX5 98 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 M0R129 80 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 RBMXL2O75526 392 aaKnown RBP13.32□□□□□ -0.28
CLK3-227ENST00000570296 RAP2AP10114 183 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 CBLN1P23435 193 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 MAP2K4P45985 399 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 SSBP2P81877 361 aaPredicted RBP13.32□□□□□ -0.28
CLK3-227ENST00000570296 HTD2P86397 168 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 PTGES3Q15185 160 aaKnown RBP13.32□□□□□ -0.28
CLK3-227ENST00000570296 ZNF554Q86TJ5 538 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 HS3ST5Q8IZT8 346 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 DNAJC9Q8WXX5 260 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 SULT4A1Q9BR01 284 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 METTL9Q9H1A3 318 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 PIPOXQ9P0Z9 390 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 GMPPBQ9Y5P6 360 aa13.32□□□□□ -0.28
CLK3-227ENST00000570296 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.31□□□□□ -0.28
CLK3-227ENST00000570296 RAB29O14966 203 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 SCAF4O95104 1147 aaKnown RBP13.31□□□□□ -0.28
CLK3-227ENST00000570296 CDRT1O95170 752 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 PRKACGP22612 351 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms