RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RBPMSQ93062 196 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 LSM10Q969L4 123 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 MSI2Q96DH6 328 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 C18orf12Q96KH6 178 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CCL13Q99616 98 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CHODLQ9H9P2 273 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CCL28Q9NRJ3 127 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CALYQ9NYX4 217 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 IDI2-AS1Q9NZ38 188 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 TLN1Q9Y490 2541 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 SVILO95425 2214 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 BOD1L1Q8NFC6 3051 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 A0A1B0GU03 582 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 CLEC18AA5D8T8 446 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 HSD17B6O14756 317 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 TAAR5O14804 337 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 RGS13O14921 159 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 RAB29O14966 203 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 SCAF4O95104 1147 aaKnown RBP6.61□□□□□ -1.35
VPS39-213ENST00000570062 PLAUP00749 431 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 HOXB5P09067 269 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR8U9P0C7N5 309 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 DANCRP0C864 163 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 MMP9P14780 707 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 NDUFB7P17568 137 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 S100A11P31949 105 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 UQCRFS1P47985 274 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 RPL31P62899 125 aaKnown RBP6.61□□□□□ -1.35
VPS39-213ENST00000570062 TLE4Q04727 773 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 GNMTQ14749 295 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 IAH1Q2TAA2 248 aaPredicted RBP6.61□□□□□ -1.35
VPS39-213ENST00000570062 ANKRD55Q3KP44 614 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 MORN2Q502X0 79 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 TMEM268Q5VZI3 342 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 C11orf71Q6IPW1 123 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 FAM71F2Q6NXP2 309 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 PRSS54Q6PEW0 395 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 MEX3BQ6ZN04 569 aaKnown RBP6.61□□□□□ -1.35
VPS39-213ENST00000570062 ZNF843Q8N446 348 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 C9orf62Q8N4C0 152 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 CLEC18CQ8NCF0 446 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR8B3Q8NGG8 313 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR13A1Q8NGR1 328 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR8U1Q8NH10 309 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR1L1Q8NH94 360 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 NEUROG1Q92886 237 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 RRNAD1Q96FB5 475 aaKnown RBP6.61□□□□□ -1.35
VPS39-213ENST00000570062 SEC22AQ96IW7 307 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 ZNF714Q96N38 554 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 OR8B2Q96RD0 313 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 S1PR3Q99500 378 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 MFFQ9GZY8 342 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 PLEKHA2Q9HB19 425 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 GFOD1Q9NXC2 390 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 KCNS2Q9ULS6 477 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 PRELID3BQ9Y3B1 194 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 ATMQ13315 3056 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 C2CD3Q4AC94 2353 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 FBN2P35556 2912 aa6.61□□□□□ -1.35
VPS39-213ENST00000570062 FXYD6-FXYD2A0A087WZ82 144 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 IGKV1D-13A0A0B4J2D9 117 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 KANTRA0A1W2PQU2 76 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 E5RGE8 158 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 ST8SIA3O43173 380 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 RBFOX2O43251 390 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS39-213ENST00000570062 SIX6O95475 246 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 MPC2O95563 127 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 IFNA7P01567 189 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 IGKV1-13P0DP09 117 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 RRASP10301 218 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 LYL1P12980 280 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 GPR12P47775 334 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 EFNA4P52798 201 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 CDSNQ15517 529 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 GPR157Q5UAW9 335 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 DCAF12L2Q5VW00 463 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 GGNBP1Q5YKI7 109 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 HEPN1Q6WQI6 88 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 SLC51BQ86UW2 128 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 ZGRF1Q86YA3 2104 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 DRAM1Q8N682 238 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 OR52L2PQ8NGH6 319 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 NEIL1Q96FI4 390 aaPredicted RBP6.6□□□□□ -1.35
VPS39-213ENST00000570062 TMEM246Q9BRR3 403 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 BARX1Q9HBU1 254 aaPredicted RBP6.6□□□□□ -1.35
VPS39-213ENST00000570062 COA4Q9NYJ1 87 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 OR1A1Q9P1Q5 309 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 NSG2Q9Y328 171 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 RNF114Q9Y508 228 aa6.6□□□□□ -1.35
VPS39-213ENST00000570062 A0A1B0GW55 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 FAM90A9PA6NNJ1 464 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 FAM90A26D6RGX4 464 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DVL1O14640 695 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 GPR137BO60478 399 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 MED6O75586 246 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 RP2O75695 350 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 CLDN1O95832 211 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 IGHV2-70P01814 119 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 LIPFP07098 398 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4L2P0CJ85 424 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms