RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SELENOKQ9Y6D0 94 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 FAT2Q9NYQ8 4349 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 YPEL1O60688 119 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 MAS1P04201 325 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 CT45A6P0DMU7 189 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 CT45A5P0DMU8 189 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 CT45A7P0DMV0 189 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 GTF2F2P13984 249 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PRR20EP86478 221 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PRR20CP86479 221 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PRR20DP86480 221 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PRR20BP86481 221 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PRR20AP86496 221 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 RAB12Q6IQ22 244 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 SLC16A13Q7RTY0 426 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 YPEL2Q96QA6 119 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PDCD1LG2Q9BQ51 273 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 RIBC2Q9H4K1 309 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 SPACA1Q9HBV2 294 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PEX16Q9Y5Y5 336 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 DNAH17Q9UFH2 4485 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 DNAH2Q9P225 4427 aa12.13□□□□□ -0.47
CLK3-223ENST00000568488 PKHD1P08F94 4074 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 OR5H14A6NHG9 310 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 ST8SIA5O15466 376 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 HOXB6P17509 224 aaKnown RBP12.12□□□□□ -0.47
CLK3-223ENST00000568488 MC5RP33032 325 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 BMI1P35226 326 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 ZNF93P35789 620 aaPredicted RBP12.12□□□□□ -0.47
CLK3-223ENST00000568488 RPL39P5Q59GN2 51 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 C6orf141Q5SZD1 244 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 OR8J1Q8NGP2 316 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 OR5AK2Q8NH90 309 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 GHSRQ92847 366 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 TINAGL1Q9GZM7 467 aaPredicted RBP12.12□□□□□ -0.47
CLK3-223ENST00000568488 COA4Q9NYJ1 87 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 WASHC3Q9Y3C0 194 aa12.12□□□□□ -0.47
CLK3-223ENST00000568488 UBE2QL1A1L167 161 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 TMEM212A6NML5 194 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 H0YJW9 148 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 SPRY2O43597 315 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 ZNF780AO75290 641 aaPredicted RBP12.11□□□□□ -0.47
CLK3-223ENST00000568488 RBBP9O75884 186 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 RPSAP08865 295 aaKnown RBP12.11□□□□□ -0.47
CLK3-223ENST00000568488 POLR2IP36954 125 aaKnown RBP12.11□□□□□ -0.47
CLK3-223ENST00000568488 LGALS7P47929 136 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 RPS16P62249 146 aaKnown RBP12.11□□□□□ -0.47
CLK3-223ENST00000568488 HTD2P86397 168 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 DDI2Q5TDH0 399 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 ZNF529Q6P280 563 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 USMG5Q96IX5 58 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 NSL1Q96IY1 281 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 JAM3Q9BX67 310 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 PIPOXQ9P0Z9 390 aa12.11□□□□□ -0.47
CLK3-223ENST00000568488 RAB29O14966 203 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 EDN2P20800 178 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 KIR2DS2P43631 304 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 FAM71F2Q6NXP2 309 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 WFDC3Q8IUB2 231 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 GAPTQ8N292 157 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 OR52B4Q8NGK2 314 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 TSNAXQ99598 290 aaKnown RBP12.1□□□□□ -0.47
CLK3-223ENST00000568488 RNF5Q99942 180 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 IFI27L2Q9H2X8 130 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 ISG20L2Q9H9L3 353 aaKnown RBP12.1□□□□□ -0.47
CLK3-223ENST00000568488 MUC4Q99102 2169 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 DNAH11Q96DT5 4516 aa12.1□□□□□ -0.47
CLK3-223ENST00000568488 G3V2T6 193 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 DCTN3O75935 186 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 APELAP0DMC3 54 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 FOLR2P14207 255 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 CPEP16870 476 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 RIPK1Q13546 671 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 DMKNQ6E0U4 476 aaPredicted RBP12.09□□□□□ -0.47
CLK3-223ENST00000568488 LHFPL3Q86UP9 236 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 ACBD7Q8N6N7 88 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 TMEM217Q8N7C4 229 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 GALMQ96C23 342 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 MRPL48Q96GC5 212 aaKnown RBP12.09□□□□□ -0.47
CLK3-223ENST00000568488 CYYR1Q96J86 154 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 THTPAQ9BU02 230 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 TMEM138Q9NPI0 162 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 MBNL3Q9NUK0 354 aaKnown RBP12.09□□□□□ -0.47
CLK3-223ENST00000568488 STEAP1Q9UHE8 339 aa12.09□□□□□ -0.47
CLK3-223ENST00000568488 E9PI62 339 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 J3QRE1 110 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 BMPR1BO00238 502 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 CA11O75493 328 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 PPP3R1P63098 170 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 DEFB135Q30KP9 77 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 HSP90B2PQ58FF3 399 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 LY6G6FQ5SQ64 297 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 KDM4DQ6B0I6 523 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 IL1F10Q8WWZ1 152 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 ABHD14BQ96IU4 210 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 ALG8Q9BVK2 526 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 ZC4H2Q9NQZ6 224 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 TECRQ9NZ01 308 aaKnown RBP12.08□□□□□ -0.48
CLK3-223ENST00000568488 TP53TG1Q9Y2A0 90 aa12.08□□□□□ -0.48
CLK3-223ENST00000568488 ARL2BPQ9Y2Y0 163 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms