RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 PPP1CCP36873 323 aaKnown RBP8.76□□□□□ -1.01
CLK3-222ENST00000568232 ALKBH1Q13686 389 aaKnown RBP8.76□□□□□ -1.01
CLK3-222ENST00000568232 DEFB135Q30KP9 77 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 ZNF562Q6V9R5 426 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 GLDNQ6ZMI3 551 aaPredicted RBP8.76□□□□□ -1.01
CLK3-222ENST00000568232 FAM220AQ7Z4H9 259 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 DHFR2Q86XF0 187 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 BVESQ8NE79 360 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 DYNLRB2Q8TF09 96 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 MRPS24Q96EL2 167 aaKnown RBP8.76□□□□□ -1.01
CLK3-222ENST00000568232 CYYR1Q96J86 154 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 GPER1Q99527 375 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 METTL1Q9UBP6 276 aaKnown RBP8.76□□□□□ -1.01
CLK3-222ENST00000568232 ING4Q9UNL4 249 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 POMPQ9Y244 141 aa8.76□□□□□ -1.01
CLK3-222ENST00000568232 PRSS29PA6NIE9 313 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 AIREO43918 545 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 FADS2O95864 444 aaKnown RBP8.75□□□□□ -1.01
CLK3-222ENST00000568232 ATF4P18848 351 aaPredicted RBP8.75□□□□□ -1.01
CLK3-222ENST00000568232 EPHA2P29317 976 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 KIR2DS2P43631 304 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 RBM11P57052 281 aaKnown RBP8.75□□□□□ -1.01
CLK3-222ENST00000568232 ZNF45Q02386 682 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 SLC16A13Q7RTY0 426 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 OR52N1Q8NH53 320 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 DNAJC9Q8WXX5 260 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 ASB9Q96DX5 294 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 VCXQ9H320 206 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 S100A14Q9HCY8 104 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 ZC4H2Q9NQZ6 224 aa8.75□□□□□ -1.01
CLK3-222ENST00000568232 H3BUA1 57 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 BMPR1BO00238 502 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 GSTP1P09211 210 aaKnown RBP8.74□□□□□ -1.01
CLK3-222ENST00000568232 CT45A6P0DMU7 189 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 CT45A5P0DMU8 189 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 CT45A7P0DMV0 189 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 FOLR2P14207 255 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 GTF2A1P52655 376 aaPredicted RBP8.74□□□□□ -1.01
CLK3-222ENST00000568232 NANOS2P60321 138 aaKnown RBP8.74□□□□□ -1.01
CLK3-222ENST00000568232 FLOT2Q14254 428 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 FXYD3Q14802 87 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 PSG5Q15238 335 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 ASCL4Q6XD76 172 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 KCTD20Q7Z5Y7 419 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 GID4Q8IVV7 300 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 SERPINA12Q8IW75 414 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 ADGRG5Q8IZF4 528 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 OR51A2Q8NGJ7 313 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 OR5D14Q8NGL3 314 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 TAF9BQ9HBM6 251 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 RCC2Q9P258 522 aaKnown RBP8.74□□□□□ -1.01
CLK3-222ENST00000568232 WARS2Q9UGM6 360 aaKnown RBP8.74□□□□□ -1.01
CLK3-222ENST00000568232 TP53TG1Q9Y2A0 90 aa8.74□□□□□ -1.01
CLK3-222ENST00000568232 A0A1W2PP11 408 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 OR4C45A6NMZ5 311 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 H7C2Y5 167 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 SERPINA2P20848 420 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 AADACP22760 399 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 ATP6V1E1P36543 226 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 HSPA13P48723 471 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 DAPP51397 102 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 SSBP2P81877 361 aaPredicted RBP8.73□□□□□ -1.01
CLK3-222ENST00000568232 TMEM30BQ3MIR4 351 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 RPL39P5Q59GN2 51 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 NHLRC3Q5JS37 347 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 C6orf183Q5T699 404 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 FDX2Q6P4F2 183 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 Q6ZWC4 215 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 ZNF575Q86XF7 245 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 STX19Q8N4C7 294 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 OR52B4Q8NGK2 314 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 SNAPC3Q92966 411 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 ZNF184Q99676 751 aaPredicted RBP8.73□□□□□ -1.01
CLK3-222ENST00000568232 TINAGL1Q9GZM7 467 aaPredicted RBP8.73□□□□□ -1.01
CLK3-222ENST00000568232 Q9H521 79 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 C8orf4Q9NR00 106 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 FBXL17Q9UF56 701 aa8.73□□□□□ -1.01
CLK3-222ENST00000568232 A0A0B4J203 849 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 TCRBV3S1A0A5B6 114 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 C2orf70A6NJV1 201 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 H0YJW9 148 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CASQ2O14958 399 aaPredicted RBP8.72□□□□□ -1.01
CLK3-222ENST00000568232 RTL8CO15255 209 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 BAG2O95816 211 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 HTR1AP08908 422 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 APELAP0DMC3 54 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CTRB1P17538 263 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CCR9P51686 369 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 C12orf73Q69YU5 71 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CTRB2Q6GPI1 263 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 TMEM61Q8N0U2 210 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 PARP16Q8N5Y8 322 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 TMEM217Q8N7C4 229 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CANT1Q8WVQ1 401 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 CACNG8Q8WXS5 425 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 RNF183Q96D59 192 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 PRRG3Q9BZD7 231 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 METTL9Q9H1A3 318 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 IFI27L2Q9H2X8 130 aa8.72□□□□□ -1.01
CLK3-222ENST00000568232 RAB9BQ9NP90 201 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms