RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ALDH3A2P51648 485 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 EWSR1Q01844 656 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS4A-203ENST00000564399 PSG5Q15238 335 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 RAB12Q6IQ22 244 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 SLC16A13Q7RTY0 426 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 C5orf24Q7Z6I8 188 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 LYG2Q86SG7 212 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 BVESQ8NE79 360 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 SNAPC3Q92966 411 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 MRPL48Q96GC5 212 aaKnown RBP5.51□□□□□ -1.53
VPS4A-203ENST00000564399 PDCD1LG2Q9BQ51 273 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 GGTLC1Q9BX51 225 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 JAM3Q9BX67 310 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 TAS2R4Q9NYW5 299 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 RCC2Q9P258 522 aaKnown RBP5.51□□□□□ -1.53
VPS4A-203ENST00000564399 JPT1Q9UK76 154 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 ARL2BPQ9Y2Y0 163 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 WASHC3Q9Y3C0 194 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 PEX16Q9Y5Y5 336 aa5.51□□□□□ -1.53
VPS4A-203ENST00000564399 LOC102724200A0A096LPH7 203 aaPredicted RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 UBE2QL1A1L167 161 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 RAB29O14966 203 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 ST8SIA5O15466 376 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 YPEL1O60688 119 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 CD2P06729 351 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 CT45A6P0DMU7 189 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 CT45A5P0DMU8 189 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 CT45A7P0DMV0 189 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 CPEP16870 476 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 POLR2IP36954 125 aaKnown RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 LGALS7P47929 136 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 RPS16P62249 146 aaKnown RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 PPP3R1P63098 170 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 TNFRSF9Q07011 255 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 FLOT2Q14254 428 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 DEFB114Q30KQ6 69 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 RPL39P5Q59GN2 51 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 DDI2Q5TDH0 399 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 KDM4DQ6B0I6 523 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 ZNF343Q6P1L6 599 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 ZNF529Q6P280 563 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 LHFPL3Q86UP9 236 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 ACBD7Q8N6N7 88 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 PHLDA1Q8WV24 401 aaPredicted RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 GHSRQ92847 366 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 GALMQ96C23 342 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 YPEL2Q96QA6 119 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 TSNAXQ99598 290 aaKnown RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 RNF5Q99942 180 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 THTPAQ9BU02 230 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 TINAGL1Q9GZM7 467 aaPredicted RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 PARP12Q9H0J9 701 aaKnown RBP5.5□□□□□ -1.53
VPS4A-203ENST00000564399 TMEM138Q9NPI0 162 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 COA4Q9NYJ1 87 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 PIPOXQ9P0Z9 390 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 STEAP1Q9UHE8 339 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 DNAH10Q8IVF4 4471 aa5.5□□□□□ -1.53
VPS4A-203ENST00000564399 G3V2T6 193 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 H0YJW9 148 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 CA11O75493 328 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 MED14OSP0DP75 135 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 BDKRB2P30411 391 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 BMI1P35226 326 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 HTD2P86397 168 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 GPR176Q14439 515 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 FAM71F2Q6NXP2 309 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 ZNF554Q86TJ5 538 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 TMEM217Q8N7C4 229 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 IL1F10Q8WWZ1 152 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 WDR89Q96FK6 387 aaPredicted RBP5.49□□□□□ -1.53
VPS4A-203ENST00000564399 USMG5Q96IX5 58 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 MYCBPQ99417 103 aaPredicted RBP5.49□□□□□ -1.53
VPS4A-203ENST00000564399 ALG8Q9BVK2 526 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 IFI27L2Q9H2X8 130 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 ISG20L2Q9H9L3 353 aaKnown RBP5.49□□□□□ -1.53
VPS4A-203ENST00000564399 IMPAD1Q9NX62 359 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 TECRQ9NZ01 308 aaKnown RBP5.49□□□□□ -1.53
VPS4A-203ENST00000564399 ABRACLQ9P1F3 81 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 LRRC42Q9Y546 428 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 SELENOKQ9Y6D0 94 aa5.49□□□□□ -1.53
VPS4A-203ENST00000564399 HECTD4Q9Y4D8 3996 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 TCRBV3S1A0A5B6 114 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 E9PI62 339 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 H3BNX3 289 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 J3QRE1 110 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 BMPR1BO00238 502 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 SPRY2O43597 315 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 GPX5O75715 221 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 SPDEFO95238 335 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 APELAP0DMC3 54 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 FOLR2P14207 255 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 FUT3P21217 361 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 CALB2P22676 271 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 KIR2DS2P43631 304 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 GBX2P52951 348 aaPredicted RBP5.48□□□□□ -1.53
VPS4A-203ENST00000564399 RIPK1Q13546 671 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 DEFB135Q30KP9 77 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 LY6G6FQ5SQ64 297 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 DMKNQ6E0U4 476 aaPredicted RBP5.48□□□□□ -1.53
VPS4A-203ENST00000564399 WFDC3Q8IUB2 231 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms