RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PHIPQ8WWQ0 1821 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 PHLPP1O60346 1717 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 PAPPAQ13219 1627 aa2.79□□□□□ -1.96
VPS35-203ENST00000562420 TRAV9-1A0A075B6T8 112 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 FXYD6-FXYD2A0A087WZ82 144 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TRAV1-2A0A0B4J238 106 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 A0A0G2JMM0 328 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 A0A1W2PPB8 328 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 MAP1LC3B2A6NCE7 125 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 IGLON5A6NGN9 336 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 KIR3DP1A8MWS1 328 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 FAM220BPB1ANY3 271 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 C17orf105B2RV13 164 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM150CB9EJG8 249 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 UMAD1C9J7I0 102 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 FTCDNL1E5RQL4 147 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CDC42EP2O14613 210 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR1F1O43749 312 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SOX15O60248 233 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CDS2O95674 445 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SEMA4FO95754 770 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 LSM8O95777 96 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 TBX6O95947 436 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 HAND1O96004 215 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 HSPB1P04792 205 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 HLA-DQB2P05538 268 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SEC11BP0C7V7 166 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TRGC1P0CF51 173 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR12D1P0DN82 309 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H1EP10412 219 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 LIPCP11150 499 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 PTHLHP12272 177 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CD99P14209 185 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SELEP16581 610 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RPL35AP18077 110 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 ALOX5APP20292 161 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 NPY1RP25929 384 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 NTSP30990 170 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 APLNRP35414 380 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CA7P43166 264 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 KIR2DS4P43632 304 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 GPR6P46095 362 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 MTCP1P56278 107 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM50BP56557 158 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RIPPLY3P57055 190 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RAB38P57729 211 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TPPP2P59282 170 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 UBE2MP61081 183 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 RPL27P61353 136 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 RHOAP61586 193 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RPS23P62266 143 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 GNG3P63215 75 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SEC11AP67812 179 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 NTHL1P78549 312 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H1AQ02539 215 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 ACVR1Q04771 509 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 BCL2L1Q07817 233 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RAB40BQ12829 278 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DHRS2Q13268 280 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ELAVL3Q14576 367 aaKnown RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 IL17AQ16552 155 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CLEC12BQ2HXU8 276 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM97Q5BJF2 176 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM78Q5T7P6 136 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ADNP2Q6IQ32 1131 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TNFAIP8L2Q6P589 184 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM91Q6ZNR0 172 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ZCCHC23Q6ZST2 131 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 CLEC20AQ6ZU45 233 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ERASQ7Z444 233 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 LRRC25Q8N386 305 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 C2orf73Q8N5S3 287 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 DEFB125Q8N687 156 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SUMF2Q8NBJ7 301 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR11G2Q8NGC1 345 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR1L4Q8NGR5 311 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR6N1Q8NGY5 312 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 SDR42E1Q8WUS8 393 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 PIGCQ92535 297 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DCUN1D4Q92564 292 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DNAJC19Q96DA6 116 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TM4SF19Q96DZ7 209 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TVP23CQ96ET8 276 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DYNLL2Q96FJ2 89 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR10C1Q96KK4 312 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DNAJC30Q96LL9 226 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 GPR22Q99680 433 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 GABRG3Q99928 467 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 VGLL1Q99990 258 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 PMCHL2Q9BQD1 86 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 DOHHQ9BU89 302 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 TMEM70Q9BUB7 260 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 MAP1LC3CQ9BXW4 147 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 MAP1LC3BQ9GZQ8 125 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 FXYD6Q9H0Q3 95 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 OR51I2Q9H344 312 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 ALG9Q9H6U8 611 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 RNF167Q9H6Y7 350 aa2.78□□□□□ -1.96
VPS35-203ENST00000562420 UBE2ZQ9H832 354 aaPredicted RBP2.78□□□□□ -1.96
VPS35-203ENST00000562420 FGF20Q9NP95 211 aaPredicted RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms