RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TMEM56Q96MV1 263 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 SPIN2AQ99865 258 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 SPIN2BQ9BPZ2 258 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 Q9N2K0 584 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 TMEM56-RWDD3S4R434 201 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 ASPMQ8IZT6 3477 aa9.66□□□□□ -0.86
CUX1-218ENST00000560541 KIAA2026Q5HYC2 2103 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 LRRC3CA6NJW4 275 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 SRP19P09132 144 aaKnown RBP9.65□□□□□ -0.86
CUX1-218ENST00000560541 PCBD1P61457 104 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 SRPXP78539 464 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 Q0VFX4 171 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 ICAM4Q14773 271 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 TOMM20LQ6UXN7 152 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 C20orf204Q6ZNR8 217 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 C1orf87Q8N0U7 546 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 IL1F10Q8WWZ1 152 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 RDH5Q92781 318 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 MTCH1Q9NZJ7 389 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 NAGKQ9UJ70 344 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 WSB1Q9Y6I7 421 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 ZNF732B4DXR9 585 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 SYNGR1O43759 233 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 NMSQ5H8A3 153 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 WDR5BQ86VZ2 330 aa9.65□□□□□ -0.86
CUX1-218ENST00000560541 KIR2DL5BA0A0G2JN68 375 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 KIR2DL5BA0A0G2JPC4 375 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 ZNF503-AS2A6NEH8 195 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 NGFP01138 241 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 PPBPP02775 128 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 RPL23AP62750 156 aaKnown RBP9.65□□□□□ -0.87
CUX1-218ENST00000560541 ARF1P84077 181 aaKnown RBP9.65□□□□□ -0.87
CUX1-218ENST00000560541 UBE2V1Q13404 147 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 PRSS8Q16651 343 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 ZNF66Q6ZN08 573 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 KIR2DL5AQ8N109 375 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 NECAP1Q8NC96 275 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 PLPPR1Q8TBJ4 325 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 KIAA1456Q9P272 454 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 GNG13Q9P2W3 67 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 ESPL1Q14674 2120 aa9.65□□□□□ -0.87
CUX1-218ENST00000560541 A6NJY4 79 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 VDAC1P21796 283 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 TLE1Q04724 770 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 CST9LP1Q5W188 147 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 SPINK14Q6IE38 97 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 OR13D1Q8NGV5 346 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 TMEM18Q96B42 140 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 CIB3Q96Q77 187 aaPredicted RBP9.64□□□□□ -0.87
CUX1-218ENST00000560541 RSG1Q9BU20 258 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 PRRG4Q9BZD6 226 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 ZNF552Q9H707 407 aaPredicted RBP9.64□□□□□ -0.87
CUX1-218ENST00000560541 CALHM2Q9HA72 323 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 TAAR3PQ9P1P4 343 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 ZNF391Q9UJN7 358 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 DOCK10Q96BY6 2186 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 ZFP92A6NM28 416 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 MRPL33O75394 65 aaKnown RBP9.64□□□□□ -0.87
CUX1-218ENST00000560541 NAPSAO96009 420 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 PLA2G5P39877 138 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 ID3Q02535 119 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 MRPL21Q7Z2W9 205 aaKnown RBP9.64□□□□□ -0.87
CUX1-218ENST00000560541 KCNE4Q8WWG9 221 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 SGCZQ96LD1 299 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 TECTBQ96PL2 329 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 MIEN1Q9BRT3 115 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 C1QTNF5Q9BXJ0 243 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 PLSCR2Q9NRY7 297 aa9.64□□□□□ -0.87
CUX1-218ENST00000560541 A0A1B0GUS0 222 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 LILRA1O75019 489 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 CELA3AP09093 270 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 IAPPP10997 89 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 PAX9P55771 341 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 NHLH1Q02575 133 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 MPV17LQ2QL34 196 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 NIPSNAP3BQ9BS92 247 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 SIT1Q9Y3P8 196 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 KNTC1P50748 2209 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 IGHV3-64DA0A0J9YX35 117 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 TRAPPC2LH3BP13 241 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 DNPH1O43598 174 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 PGLYRP1O75594 196 aaPredicted RBP9.63□□□□□ -0.87
CUX1-218ENST00000560541 PSG2P11465 335 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 UCP1P25874 307 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 GLIPR1P48060 266 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 FGF12P61328 243 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 RAB11AP62491 216 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 WDR73Q6P4I2 378 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 LCN15Q6UWW0 184 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 VSIRQ9H7M9 311 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 A0A1B0GW64 132 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 TRIM61Q5EBN2 209 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 VASH2Q86V25 355 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 ZDHHC23Q8IYP9 409 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 CLDND2Q8NHS1 167 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 MAFAQ8NHW3 353 aaPredicted RBP9.63□□□□□ -0.87
CUX1-218ENST00000560541 SPSB4Q96A44 273 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 ATP5SQ99766 215 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 CABLES2Q9BTV7 478 aa9.63□□□□□ -0.87
CUX1-218ENST00000560541 ZNF16P17020 682 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms