RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 ACTBP60709 375 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 ACTG1P63261 375 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 CDK10Q15131 360 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 FAM71F2Q6NXP2 309 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 FAM131AQ6UXB0 335 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 PIFOQ8TCI5 191 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 RTN4IP1Q8WWV3 396 aaPredicted RBP17.46■□□□□ 0.39
SNX1-206ENST00000559389 PIPOXQ9P0Z9 390 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 MTFP1Q9UDX5 166 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 VPREB3Q9UKI3 123 aa17.46■□□□□ 0.39
SNX1-206ENST00000559389 MXRA5Q9NR99 2828 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 TXNL1O43396 289 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 GAPDHP04406 335 aaKnown RBP17.45■□□□□ 0.38
SNX1-206ENST00000559389 RNASE1P07998 156 aaKnown RBP17.45■□□□□ 0.38
SNX1-206ENST00000559389 NFYAP23511 347 aaPredicted RBP17.45■□□□□ 0.38
SNX1-206ENST00000559389 REG1BP48304 166 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 SRSF2Q01130 221 aaKnown RBP17.45■□□□□ 0.38
SNX1-206ENST00000559389 ZNF833PQ6ZTB9 187 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 FCAMRQ8WWV6 532 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 CFHR4Q92496 578 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 ABHD14BQ96IU4 210 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 CHIAQ9BZP6 476 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 ABCB10Q9NRK6 738 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 KLK11Q9UBX7 282 aa17.45■□□□□ 0.38
SNX1-206ENST00000559389 IGHV1-3A0A0C4DH29 117 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 TIMM23O14925 209 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 RAB29O14966 203 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 TUSC2O75896 110 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 ETV6P41212 452 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 OR3A3P47888 321 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 HABP2Q14520 560 aaPredicted RBP17.44■□□□□ 0.38
SNX1-206ENST00000559389 TGIF2LXQ8IUE1 241 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 LYSMD2Q8IV50 215 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 OR5H2Q8NGV7 314 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 ZNF251Q9BRH9 671 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 GHITMQ9H3K2 345 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 TNFRSF19Q9NS68 423 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 EHFQ9NZC4 300 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 TCF19Q9Y242 345 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 OR2W1Q9Y3N9 320 aa17.44■□□□□ 0.38
SNX1-206ENST00000559389 NF1P21359 2839 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 TRIM77I1YAP6 450 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 GSTZ1O43708 216 aaPredicted RBP17.43■□□□□ 0.38
SNX1-206ENST00000559389 RBBP9O75884 186 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OR8U9P0C7N5 309 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OR5H8P0DN80 308 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 HLA-DMAP28067 261 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 BRS3P32247 399 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 HRH1P35367 487 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 SSBP1Q04837 148 aaKnown RBP17.43■□□□□ 0.38
SNX1-206ENST00000559389 ZNF79Q15937 498 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OVCH2Q7RTZ1 564 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OR8U1Q8NH10 309 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OR56B4Q8NH76 319 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 OR2D2Q9H210 308 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 PTTG2Q9NZH5 202 aa17.43■□□□□ 0.38
SNX1-206ENST00000559389 RBMX2Q9Y388 322 aaKnown RBP17.43■□□□□ 0.38
SNX1-206ENST00000559389 PMP2P02689 132 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 PTBP1P26599 531 aaKnown RBP eCLIP17.42■□□□□ 0.38
SNX1-206ENST00000559389 GPR12P47775 334 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 RAB13P51153 203 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 DYRK1AQ13627 763 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 ACTBL2Q562R1 376 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 RPL39P5Q59GN2 51 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 SPANXN2Q5MJ10 180 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 DRAM1Q8N682 238 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.42■□□□□ 0.38
SNX1-206ENST00000559389 ZFAND2BQ8WV99 257 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 MRPL20Q9BYC9 149 aaKnown RBP17.42■□□□□ 0.38
SNX1-206ENST00000559389 ZNF221Q9UK13 617 aa17.42■□□□□ 0.38
SNX1-206ENST00000559389 PPYP01298 95 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 AADACP22760 399 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 FCGR2CP31995 323 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 VAX1Q5SQQ9 334 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 S1PR3Q99500 378 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 ZNF107Q9UII5 783 aaPredicted RBP17.41■□□□□ 0.38
SNX1-206ENST00000559389 RNF150Q9ULK6 438 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 GAB2Q9UQC2 676 aa17.41■□□□□ 0.38
SNX1-206ENST00000559389 IGKV1D-13A0A0B4J2D9 117 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 A6NDX4 124 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 FAM90A9PA6NNJ1 464 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 ZNF736B4DX44 427 aaPredicted RBP17.4■□□□□ 0.38
SNX1-206ENST00000559389 GPR137BO60478 399 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 PROP1O75360 226 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 IGKV1-13P0DP09 117 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 TBPP20226 339 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 RFX2P48378 723 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 LUMP51884 338 aaPredicted RBP17.4■□□□□ 0.38
SNX1-206ENST00000559389 LSAMPQ13449 338 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 LY6EQ16553 131 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 FBLN7Q53RD9 439 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 ZNF660Q6AZW8 331 aaPredicted RBP17.4■□□□□ 0.38
SNX1-206ENST00000559389 C16orf87Q6PH81 154 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 LIAT1Q6ZQX7 453 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 MOB3BQ86TA1 216 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 GIMAP1Q8WWP7 306 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 C5orf30Q96GV9 206 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 NABP2Q9BQ15 211 aa17.4■□□□□ 0.38
SNX1-206ENST00000559389 RBM7Q9Y580 266 aaKnown RBP17.4■□□□□ 0.38
SNX1-206ENST00000559389 SNRNP70P08621 437 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms