RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LRRC30A6NM36 301 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 IQCF5A8MTL0 148 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM238C9JI98 176 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 C9JQL5 133 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 PPIAL4DF5H284 164 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 H3BN98 237 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FOXE1O00358 373 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FFAR1O14842 300 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SCAMP2O15127 329 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TAPBPO15533 448 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR1F1O43749 312 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR10H3O60404 316 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 GLSO94925 669 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FARS2O95363 451 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CLDN9O95484 217 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 HPRT1P00492 218 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 IFNA21P01568 189 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 GAPDHP04406 335 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 BCHEP06276 602 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SOD3P08294 240 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CST2P09228 141 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CTXN2P0C2S0 81 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 NBEAP1P0C6P0 100 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 AKAIN1P0CW23 69 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 PPIAL4FP0DN26 164 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR12D1P0DN82 309 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SCGB1A1P11684 91 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TDGF1P13385 188 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ATF1P18846 271 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SRMP19623 302 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SLC2A5P22732 501 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 DTYMKP23919 212 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 COX7A1P24310 79 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CXCR1P25024 350 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OTX1P32242 354 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 BRS3P32247 399 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SNCAP37840 140 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 GABRA4P48169 554 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CX3CR1P49238 355 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TTPAP49638 278 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 P2RX1P51575 399 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 RND2P52198 227 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 AKR1C2P52895 323 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CEBPGP53567 150 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TAS2R20P59543 309 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 UBE2MP61081 183 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 RPS23P62266 143 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ACTA2P62736 377 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ACTC1P68032 377 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CSNK1G2P78368 415 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 H3F3AP84243 136 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FAM3AP98173 230 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 HMGCS1Q01581 520 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 AKR1C1Q04828 323 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FUT7Q11130 342 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CLINT1Q14677 625 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ELOBQ15370 118 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 IQCJQ1A5X6 159 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SLC25A35Q3KQZ1 300 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM176BQ3YBM2 270 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 MORN2Q502X0 79 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ACSM3Q53FZ2 586 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ACTBL2Q562R1 376 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CPTPQ5TA50 214 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM225Q6GV28 225 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR2A2Q6IF42 318 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 NOXRED1Q6NXP6 359 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 RPL22L1Q6P5R6 122 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TRIM40Q6P9F5 258 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SBSNQ6UWP8 590 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF562Q6V9R5 426 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM184AQ6ZMB5 413 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 COMMD6Q7Z4G1 85 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 THOC6Q86W42 341 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SYS1Q8N2H4 156 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM229BQ8NBD8 167 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 LFNGQ8NES3 379 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 NOXO1Q8NFA2 376 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 STEAP2Q8NFT2 490 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR8G5Q8NG78 346 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR4S1Q8NGB4 309 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR4K17Q8NGC6 315 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR52M1Q8NGK5 317 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR10G4Q8NGN3 311 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 OR51A7Q8NH64 312 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 RPS4Y2Q8TD47 263 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 CXorf40AQ8TE69 158 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 C16orf78Q8WTQ4 265 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TNFAIP8L1Q8WVP5 186 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ASB17Q8WXJ9 295 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 NDRG1Q92597 394 aaKnown RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SMARCD2Q92925 531 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FBXO32Q969P5 355 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM106AQ96A25 262 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 PPCDCQ96CD2 204 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM12Q96EX1 92 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 ACY3Q96HD9 319 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 PGLYRP3Q96LB9 341 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 IP6K3Q96PC2 410 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 AQP10Q96PS8 301 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms