RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 FLYWCH2Q96CP2 140 aaKnown RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 MAP1LC3CQ9BXW4 147 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 WNT10AQ9GZT5 417 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF552Q9H707 407 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 OR51B2Q9Y5P1 312 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 FNDC1Q4ZHG4 1894 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 DBX1A6NMT0 343 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 S1PR2O95136 353 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CBLN1P23435 193 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SUB1P53999 127 aaKnown RBP eCLIP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 RAC1P63000 192 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ERHP84090 104 aaKnown RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF124Q15973 351 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 PRR31Q5SQ13 230 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 HES3Q5TGS1 186 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 MIC13Q5XKP0 118 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CDPF1Q6NVV7 123 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 C1QL4Q86Z23 238 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ST6GALNAC6Q969X2 333 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 FAM122AQ96E09 287 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 KCNS1Q96KK3 526 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 OR4C12Q96R67 309 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 PARD6GQ9BYG4 376 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CXXC4Q9H2H0 198 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SDF2L1Q9HCN8 221 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 GLRX2Q9NS18 164 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SCO2A0A1W2PP80 73 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 K7EQM0 130 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SLC17A3O00476 420 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CD82P27701 267 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CD1BP29016 333 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 UCP3P55916 312 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SUPT4H1P63272 117 aaKnown RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CEACAM21Q3KPI0 293 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 TPRX1Q8N7U7 411 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ZCCHC14Q8WYQ9 949 aaKnown RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 WDYHV1Q96HA8 205 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ABHD14BQ96IU4 210 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 A0A1W2PRD5 423 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 A0A1W2PRF3 423 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 A0A1W2PRM7 423 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 TOX3O15405 576 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 CD99P14209 185 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 ORM2P19652 201 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 FCER1GP30273 86 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 ATP5G3P48201 142 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 FGF12P61328 243 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 MEF2BQ02080 365 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 NHLH1Q02575 133 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 KIAA1644Q3SXP7 199 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 PQLC2Q6ZP29 291 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 Q8IYB0 196 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 LYG1Q8N1E2 194 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR2D3Q8NGH3 330 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 CT55Q8WUE5 264 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 IER2Q9BTL4 223 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 C5orf63A6NC05 138 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 EPOPA6NHQ4 379 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 GALR2O43603 387 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 F2RP25116 425 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 UBE2L3P68036 154 aaKnown RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 HGFACQ04756 655 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 WDR74Q6RFH5 385 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 MDP1Q86V88 176 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR8A1Q8NGG7 326 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR1L1Q8NH94 360 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 FAM131CQ96AQ9 280 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 HIST1H2BLQ99880 126 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR2J1Q9GZK6 312 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 ZNF355PQ9NSJ1 428 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 FOXD3Q9UJU5 478 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 SCN3AQ9NY46 2000 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR2J3O76001 311 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 CNIH1O95406 144 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 HIST1H1BP16401 226 aaKnown RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 GPX4P36969 197 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 SRSF4Q08170 494 aaKnown RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 GABRA6Q16445 453 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 C10orf91Q5T1B1 145 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 OR4D5Q8NGN0 318 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 SF3B5Q9BWJ5 86 aaKnown RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 SRD5A3Q9H8P0 318 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 TECRQ9NZ01 308 aaKnown RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 PROCRQ9UNN8 238 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 SCN10AQ9Y5Y9 1956 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 VSTM5A8MXK1 200 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 LDLRAD4O15165 306 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 NEURL1O76050 574 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 KBTBD11O94819 623 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 HTR1DP28221 377 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 GPR6P46095 362 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-223ENST00000557005 PPOXP50336 477 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 C10orf113Q5VZT2 155 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 LEMD1Q68G75 181 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 RHBDD2Q6NTF9 364 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 WNT5BQ9H1J7 359 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 ZNF576Q9H609 170 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 DYNLRB1Q9NP97 96 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 ZNF319Q9P2F9 582 aa4.27□□□□□ -1.73
SYNE2-223ENST00000557005 LNP1A1A4G5 178 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms