RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 APOBEC3AP31941 199 aaPredicted RBP21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 C1orf87Q8N0U7 546 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 C5orf30Q96GV9 206 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 REG4Q9BYZ8 158 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 SAP30LQ9HAJ7 183 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 IGHV3-43A0A0B4J1X8 118 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 A0A0G2JRQ6 117 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 LGALS8O00214 317 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 SIGLEC5O15389 551 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 JTBO76095 146 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 IGHV3-43DP0DP04 118 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 POLR2GP62487 172 aaKnown RBP eCLIP21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 CXorf66Q5JRM2 361 aaPredicted RBP21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 RPL7L1Q6DKI1 246 aaKnown RBP21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 ZNF66Q6ZN08 573 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 DEFB108BQ8NET1 73 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 MFSD2BA6NFX1 497 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 GYPAP02724 150 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 RNASE11Q8TAA1 199 aaKnown RBP21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 LINC01560Q8TB33 94 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 CCL13Q99616 98 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 MS4A5Q9H3V2 200 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 SDHAF2Q9NX18 166 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 CALYQ9NYX4 217 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 CFAP46Q8IYW2 2715 aa21.87■■□□□ 1.09
CCDC88C-205ENST00000553403 TRAV38-1A0A0B4J264 116 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 NKX6-3A6NJ46 265 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 FGF16O43320 207 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 SELLP14151 372 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 MORN2Q502X0 79 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 EIF5AL1Q6IS14 154 aaKnown RBP21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 TGIF2LYQ8IUE0 185 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 ZNF808Q8N4W9 903 aaPredicted RBP21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 AGMATQ9BSE5 352 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 DYNLRB1Q9NP97 96 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 GNG12Q9UBI6 72 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 DYSFO75923 2080 aa21.86■■□□□ 1.09
CCDC88C-205ENST00000553403 B9A039 149 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 IGKV1-5P01602 117 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 LPAR6P43657 344 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 LOXL3P58215 753 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 VAMP2P63027 116 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 OR2C3Q8N628 320 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 NEUROG1Q92886 237 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 DCAF16Q9NXF7 216 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 PSG11Q9UQ72 335 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 RNF115Q9Y4L5 304 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 GCN1Q92616 2671 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 ZNF462Q96JM2 2506 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 TLN1Q9Y490 2541 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 TMEM178BH3BS89 294 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 ITGB1BP1O14713 200 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 AKR1C2P52895 323 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 RPL30P62888 115 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 ZCCHC24Q8N2G6 241 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 HSD17B10Q99714 261 aaKnown RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 SLC25A31Q9H0C2 315 aa21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 BARX1Q9HBU1 254 aaPredicted RBP21.85■■□□□ 1.09
CCDC88C-205ENST00000553403 PLCE1Q9P212 2302 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 TRGV10A0A0A0MS01 117 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 DEFB108AA8MXU0 73 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 ST8SIA5O15466 376 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 EPHA1P21709 976 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 C17orf58Q2M2W7 97 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 MST1LQ2TV78 715 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 DUX4L9Q6RFH8 374 aaPredicted RBP21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 HSD17B13Q7Z5P4 300 aaPredicted RBP21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 UBAC2Q8NBM4 344 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 RNF141Q8WVD5 230 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 TMED6Q8WW62 240 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 CORO2AQ92828 525 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 POLEQ07864 2286 aa21.84■■□□□ 1.09
CCDC88C-205ENST00000553403 KBTBD11-OT1A0A1B0GTJ5 212 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 MEX3AA1L020 520 aaKnown RBP21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 WRBO00258 174 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 SSSCA1O60232 199 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 ATG12O94817 140 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 CLDN1O95832 211 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 LTC4SQ16873 150 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 TMEM30BQ3MIR4 351 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 TOR2AQ5JU69 321 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 EIF4E3Q8N5X7 224 aaKnown RBP21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 MAGT1Q9H0U3 335 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 ARV1Q9H2C2 271 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 KCNJ16Q9NPI9 418 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 LYRM2Q9NU23 88 aaPredicted RBP21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 CLN8Q9UBY8 286 aa21.83■■□□□ 1.09
CCDC88C-205ENST00000553403 PPIAL4EA0A075B759 164 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 BORCS7-ASMTA0A0B4J1R7 106 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 KIAA1324LA8MWY0 1029 aaPredicted RBP21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 PPIAL4DF5H284 164 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 I3L521 148 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 PPIAL4FP0DN26 164 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 GRNP28799 593 aaKnown RBP21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 EWSR1Q01844 656 aaKnown RBP eCLIP21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 FAM216BQ8N7L0 139 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 CA5BP1Q8WTZ4 195 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 TCTEX1D2Q8WW35 142 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 BSCL2Q96G97 398 aaPredicted RBP21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 SMIM3Q9BZL3 60 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms