RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MARCKSL1P49006 195 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 CDK9P50750 372 aaKnown RBP3.52□□□□□ -1.85
SCFD1-208ENST00000553278 CCDC121Q6ZUS5 278 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 LRRC25Q8N386 305 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-208ENST00000553278 OR51D1Q8NGF3 324 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 MS4A6EQ96DS6 147 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 RMI2Q96E14 147 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 LINC00477Q96M19 166 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 SDHCQ99643 169 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-208ENST00000553278 TMEM109Q9BVC6 243 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 OR2D2Q9H210 308 aa3.52□□□□□ -1.85
SCFD1-208ENST00000553278 ZNF230Q9UIE0 474 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-208ENST00000553278 KIF15Q9NS87 1388 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 TTC21AQ8NDW8 1320 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 TRIP11Q15643 1979 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 ZNF729A6NN14 1252 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-208ENST00000553278 A8MWP4 228 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-208ENST00000553278 IGLV3-27P01718 113 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 TRGV3P03979 118 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 OR5G3P0C626 314 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 CGB3P0DN86 165 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 CGB7P0DN87 165 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 CTLA4P16410 223 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 VBP1P61758 197 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 PRDX4Q13162 271 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 PDGFRLQ15198 375 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 C16orf47Q6ZP98 133 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-208ENST00000553278 ZNF550Q7Z398 422 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 STX12Q86Y82 276 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 SGPP2Q8IWX5 399 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 OSR2Q8N2R0 312 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 SLC35B4Q969S0 331 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 TLNRD1Q9H1K6 362 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 GLTPQ9NZD2 209 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 DHCR7Q9UBM7 475 aaKnown RBP3.51□□□□□ -1.85
SCFD1-208ENST00000553278 ICOSQ9Y6W8 199 aa3.51□□□□□ -1.85
SCFD1-208ENST00000553278 COL27A1Q8IZC6 1860 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-208ENST00000553278 A0A1B0GV50 99 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 SMIM9A6NGZ8 99 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 CHP2O43745 196 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 MT-CO2P00403 227 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 SERPINA1P01009 418 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 IGKV1D-33P01593 117 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 IGKV1-33P01594 117 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 CD79AP11912 226 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 CD34P28906 385 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 PPP1CCP36873 323 aaKnown RBP3.5□□□□□ -1.85
SCFD1-208ENST00000553278 CA7P43166 264 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 TMEM33P57088 247 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 LINC00313P59037 77 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 DEFA6Q01524 100 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 EDDM3AQ14507 147 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 C1orf158Q8N1D5 194 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 OR11G2Q8NGC1 345 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 OR1L8Q8NGR8 309 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 RPUSD1Q9UJJ7 312 aaKnown RBP3.5□□□□□ -1.85
SCFD1-208ENST00000553278 STOML2Q9UJZ1 356 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 FBXO5Q9UKT4 447 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 WASHC3Q9Y3C0 194 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 MRPS16Q9Y3D3 137 aaKnown RBP3.5□□□□□ -1.85
SCFD1-208ENST00000553278 PHLDA3Q9Y5J5 127 aa3.5□□□□□ -1.85
SCFD1-208ENST00000553278 NUP205Q92621 2012 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 ZBED9Q6R2W3 1325 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 BAZ1BQ9UIG0 1483 aaKnown RBP3.49□□□□□ -1.85
SCFD1-208ENST00000553278 IGKV1-12A0A0C4DH73 117 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 LINC00862A6NCI5 91 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 A6NED7 52 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 M0R381 172 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 EEF1E1O43324 174 aaKnown RBP3.49□□□□□ -1.85
SCFD1-208ENST00000553278 GSTZ1O43708 216 aaPredicted RBP3.49□□□□□ -1.85
SCFD1-208ENST00000553278 IGKV1D-12P01611 117 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 KRTAP5-9P26371 169 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 CRABP2P29373 138 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 OR10J1P30954 320 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 OPRM1P35372 400 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 AKR1C2P52895 323 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 IFITM2Q01629 132 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 BSPH1Q075Z2 132 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 APOFQ13790 326 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 GUK1Q16774 197 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 C1orf194Q5T5A4 169 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 FAM173BQ6P4H8 233 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 SBSNQ6UWP8 590 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 CALHM3Q86XJ0 350 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 C3orf22Q8N5N4 141 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 TMEM86BQ8N661 226 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 PHOSPHO2Q8TCD6 241 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 DCUN1D1Q96GG9 259 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 OR52E6Q96RD3 313 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 SEC22CQ9BRL7 303 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 PLCH2O75038 1416 aa3.49□□□□□ -1.85
SCFD1-208ENST00000553278 IGHV3OR16-8A0A075B7F1 116 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 C16orf90A8MZG2 172 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 IGHG2P01859 326 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 OPN1SWP03999 348 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 FAM228BP0C875 321 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 MAP2K4P45985 399 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 LDLRAD2Q5SZI1 272 aa3.48□□□□□ -1.85
SCFD1-208ENST00000553278 C5orf46Q6UWT4 87 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms