RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZNF519Q8TB69 540 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 C22orf15Q8WYQ4 148 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 RNASE6Q93091 150 aaKnown RBP6.52□□□□□ -1.36
LIMA1-216ENST00000552909 ADAT3Q96EY9 351 aaPredicted RBP6.52□□□□□ -1.36
LIMA1-216ENST00000552909 OXGR1Q96P68 337 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 RBM24Q9BX46 236 aaKnown RBP6.52□□□□□ -1.36
LIMA1-216ENST00000552909 BANF2Q9H503 90 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 C12orf49Q9H741 205 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 B3GAT1Q9P2W7 334 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 NAGKQ9UJ70 344 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 LAMP3Q9UQV4 416 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 AQP7P3A6NL99 342 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF878C9JN71 531 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 ITGB1BP1O14713 200 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 PITX3O75364 302 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 HPRT1P00492 218 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 IL6RP08887 468 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 TUBG1P23258 451 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 DUSP1P28562 367 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 NTF4P34130 210 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 DAP3P51398 398 aaKnown RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 IDH3GP51553 393 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 ELLP55199 621 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 KRTAP10-9P60411 292 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 OR5I1Q13606 314 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 FAM90A2PQ658T7 463 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 C22orf34Q6ZV56 151 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 NUFIP2Q7Z417 695 aaKnown RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 WDFY1Q8IWB7 410 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 FBXL14Q8N1E6 418 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM170AQ8WVE7 144 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 ASB10Q8WXI3 467 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 GMPPAQ96IJ6 420 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 BOD1Q96IK1 185 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF2Q9BSG1 426 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-216ENST00000552909 SDF2L1Q9HCN8 221 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 CRIM1Q9NZV1 1036 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 SLC7A11Q9UPY5 501 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 RFNGQ9Y644 331 aa6.52□□□□□ -1.37
LIMA1-216ENST00000552909 MSTNO14793 375 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 SS18L1O75177 396 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 IGHMP01871 453 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 H2BFMP0C1H6 154 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 FCGR2AP12318 317 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF823P16415 610 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 SELEP16581 610 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF20P17024 532 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 FAM3BP58499 235 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 RBX1P62877 108 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ACOT6Q3I5F7 207 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CARD17Q5XLA6 110 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 DPPA3Q6W0C5 159 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 SSX7Q7RTT5 188 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM123Q8N131 208 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 C17orf78Q8N4C9 275 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR2C3Q8N628 320 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ADPRHL1Q8NDY3 354 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 GNPNAT1Q96EK6 184 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 PYGO2Q9BRQ0 406 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR2J1Q9GZK6 312 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR10A2Q9H208 303 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR51B6Q9H340 312 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 DNAJC4Q9NNZ3 241 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 PLSCR4Q9NRQ2 329 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZFP30Q9Y2G7 519 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 LOC102725191A0A1B0GVB3 256 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 A0A1W2PP11 408 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 A0A1W2PPQ1 181 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 FAM221AA4D161 298 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF705FA8MVS1 300 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 MPZL1O95297 269 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 LCATP04180 440 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF705DP0CH99 300 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF705BP0CI00 300 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR3A4PP47883 348 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CLDN17P56750 224 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 PIGPP57054 158 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM187Q14656 261 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 BATFQ16520 125 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 SP6Q3SY56 376 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 WDR25Q64LD2 544 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 LYZL2Q7Z4W2 148 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CMTM1Q8IZ96 169 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 GBGT1Q8N5D6 347 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR52M1Q8NGK5 317 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 OR2AJ1Q8NGZ0 328 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CYYR1Q96J86 154 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 C1orf147Q96MC9 270 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 SPACA5Q96QH8 159 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 MIEN1Q9BRT3 115 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 HIPK2Q9H2X6 1198 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 NAA60Q9H7X0 242 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CENPMQ9NSP4 180 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF701Q9NV72 531 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 GNG13Q9P2W3 67 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 PROCRQ9UNN8 238 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 COA3Q9Y2R0 106 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-216ENST00000552909 CADP27708 2225 aa6.51□□□□□ -1.37
LIMA1-216ENST00000552909 FAM24AA6NFZ4 105 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms