RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NEUROG1Q92886 237 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 MEGF10Q96KG7 1140 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 PLEKHA2Q9HB19 425 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 RHOFQ9HBH0 211 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 HRNRQ86YZ3 2850 aaPredicted RBP9.26□□□□□ -0.93
CUX1-212ENST00000547394 C17orf98A8MV24 154 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 JTBO76095 146 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 CD40P25942 277 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 CEACAM8P31997 349 aaPredicted RBP9.26□□□□□ -0.93
CUX1-212ENST00000547394 TIMP3P35625 211 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 PAX9P55771 341 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 NKX6-1P78426 367 aaPredicted RBP9.26□□□□□ -0.93
CUX1-212ENST00000547394 POM121Q96HA1 1249 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 TLNRD1Q9H1K6 362 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 PIGMQ9H3S5 423 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 ZNRD1Q9P1U0 126 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 GPR37O15354 613 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 METTL15P1P0C7V9 234 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 P2RY1P47900 373 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 MIDNQ504T8 468 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 SSX9Q7RTT3 188 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 VKORC1L1Q8N0U8 176 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 FAM213BQ8TBF2 198 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 NINJ1Q92982 152 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 GLS2Q9UI32 602 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 PCP4L1A6NKN8 68 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 LINC00473A8K010 186 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 F8W036 122 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 S1PR2O95136 353 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 S100GP29377 79 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 AKR1C3P42330 323 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 BRWD1-AS2P59051 145 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 BLOC1S1P78537 153 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 SRPXP78539 464 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 SWI5Q1ZZU3 235 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 ETV3LQ6ZN32 361 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 TCTEX1D2Q8WW35 142 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 TSNAXQ99598 290 aaKnown RBP9.25□□□□□ -0.93
CUX1-212ENST00000547394 SFXN3Q9BWM7 321 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 C11orf1Q9H5F2 150 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 GNG12Q9UBI6 72 aa9.25□□□□□ -0.93
CUX1-212ENST00000547394 TMEM218A2RU14 115 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 TAAR5O14804 337 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 ZNF737O75373 536 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 GLRXP35754 106 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 ID3Q02535 119 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 BSPH1Q075Z2 132 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 KRTCAP3Q53RY4 240 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 RPL39P5Q59GN2 51 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 MOB1BQ7L9L4 216 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 FAM216BQ8N7L0 139 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 CCL13Q99616 98 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 RNF115Q9Y4L5 304 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 DPRXA6NFQ7 191 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 C1QTNF9BB2RNN3 333 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 GFRA3O60609 400 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 IGHV1-46P01743 117 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 GYPAP02724 150 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 LMO1P25800 156 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 ATP6V0CP27449 155 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 CAMLGP49069 296 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 SULT1A2P50226 295 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 TLE1Q04724 770 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 ARL16Q0P5N6 197 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 PUSL1Q8N0Z8 303 aaKnown RBP9.24□□□□□ -0.93
CUX1-212ENST00000547394 UBAC2Q8NBM4 344 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 SMIM8Q96KF7 97 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 SPIN2AQ99865 258 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 SPIN2BQ9BPZ2 258 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 KCNJ16Q9NPI9 418 aa9.24□□□□□ -0.93
CUX1-212ENST00000547394 LYRM2Q9NU23 88 aaPredicted RBP9.24□□□□□ -0.93
CUX1-212ENST00000547394 OOEPA6NGQ2 149 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 SRRM5B3KS81 715 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 SLC31A2O15432 143 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 RBMXL2O75526 392 aaKnown RBP9.23□□□□□ -0.93
CUX1-212ENST00000547394 THBDP07204 575 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 TNFAIP6P98066 277 aaPredicted RBP9.23□□□□□ -0.93
CUX1-212ENST00000547394 SPANXN5Q5MJ07 72 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 SLC35E4Q6ICL7 350 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 SPAG16Q8N0X2 631 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 EIF4E3Q8N5X7 224 aaKnown RBP9.23□□□□□ -0.93
CUX1-212ENST00000547394 GCM1Q9NP62 436 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 FBXO7Q9Y3I1 522 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 BORCS7-ASMTA0A0B4J1R7 106 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 TRGV8A0A0C4DH27 118 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 ODAMA1E959 279 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 C16orf97H3BN30 126 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 PVALBP20472 110 aaPredicted RBP9.23□□□□□ -0.93
CUX1-212ENST00000547394 NFYBP25208 207 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 PPT1P50897 306 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 ZNF134P52741 427 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 CCL20P78556 96 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 PJVKQ0ZLH3 352 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 SHEQ5VZ18 495 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 C1orf229Q6ZS94 237 aaPredicted RBP9.23□□□□□ -0.93
CUX1-212ENST00000547394 FAM90A1Q86YD7 464 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 CBLN2Q8IUK8 224 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 OR2G3Q8NGZ4 309 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 ZDHHC16Q969W1 377 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 PLEKHF2Q9H8W4 249 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms