RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 E7EQL1 145 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 GPR137BO60478 399 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 KRASP01116 189 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 P2RY1P47900 373 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 ERVFRD-1P60508 538 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-216ENST00000541410 OR2C3Q8N628 320 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 CCL17Q92583 94 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 LIN7CQ9NUP9 197 aaKnown RBP12.07□□□□□ -0.48
CLIP1-216ENST00000541410 COQ3Q9NZJ6 369 aa12.07□□□□□ -0.48
CLIP1-216ENST00000541410 MED19A0JLT2 244 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-216ENST00000541410 WRBO00258 174 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 FAM157CP0CG43 387 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 G6PCP35575 357 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 ID4P47928 161 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 VAMP2P63027 116 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 EWSR1Q01844 656 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLIP1-216ENST00000541410 HSD17B11Q8NBQ5 300 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 TCTEX1D2Q8WW35 142 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-216ENST00000541410 LINC00473A8K010 186 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 TMPRSS2O15393 492 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 IRF2P14316 349 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF134P52741 427 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 BRWD1-AS2P59051 145 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 ID3Q02535 119 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 STUMQ69YW2 141 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 STPG2Q8N412 459 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 PPP1R35Q8TAP8 253 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 GAFA1Q96PS6 74 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 AGMATQ9BSE5 352 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 SH3BGRL3Q9H299 93 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 C11orf1Q9H5F2 150 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 SAP30LQ9HAJ7 183 aa12.06□□□□□ -0.48
CLIP1-216ENST00000541410 RALYQ9UKM9 306 aaKnown RBP12.06□□□□□ -0.48
CLIP1-216ENST00000541410 TAAR5O14804 337 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 IAPPP10997 89 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 ODF3L1Q8IXM7 274 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 KDF1Q8NAX2 398 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-216ENST00000541410 RNF141Q8WVD5 230 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 IL22RA2Q969J5 263 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 HRH4Q9H3N8 390 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 DUXBA0A1W2PPF3 345 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 CLEC18AA5D8T8 446 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 SLC31A2O15432 143 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 S1PR2O95136 353 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 CLDN1O95832 211 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 FGF2P09038 288 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 ARHGDIBP52566 201 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 TUSC1Q2TAM9 212 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 MORN2Q502X0 79 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 RPL39P5Q59GN2 51 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 SPAG16Q8N0X2 631 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 CLEC18CQ8NCF0 446 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 LRRC20Q8TCA0 184 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 ZCCHC14Q8WYQ9 949 aaKnown RBP12.05□□□□□ -0.48
CLIP1-216ENST00000541410 ZFP57Q9NU63 452 aa12.05□□□□□ -0.48
CLIP1-216ENST00000541410 PROP1O75360 226 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 JTBO76095 146 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 CLDN14O95500 239 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 PVALBP20472 110 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-216ENST00000541410 GZMHP20718 246 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 NFYBP25208 207 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 PAX9P55771 341 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 ADORA2A-AS1P86434 159 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 NCMAPQ5T1S8 102 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 CCDC28AQ8IWP9 274 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF561Q8N587 486 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 TMEM252Q8N6L7 170 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 FAM222BQ8WU58 562 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 DYNLRB1Q9NP97 96 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 MED9Q9NWA0 146 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 CALYQ9NYX4 217 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 RNF115Q9Y4L5 304 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 FGF16O43320 207 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 PITX3O75364 302 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 MED6O75586 246 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 C1QL1O75973 258 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 NDUFB7P17568 137 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 TNFRSF1AP19438 455 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 LOXL3P58215 753 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 TMEM267Q0VDI3 215 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-216ENST00000541410 C17orf58Q2M2W7 97 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 GPR157Q5UAW9 335 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 TCF23Q7RTU1 214 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF295-AS1Q8N0V1 137 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 ST6GALNAC3Q8NDV1 305 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 NARS2Q96I59 477 aaKnown RBP12.04□□□□□ -0.48
CLIP1-216ENST00000541410 NARFLQ9H6Q4 476 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 LYRM2Q9NU23 88 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-216ENST00000541410 SESN1Q9Y6P5 492 aa12.04□□□□□ -0.48
CLIP1-216ENST00000541410 A0A1B0GU03 582 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 KIAA1324LA8MWY0 1029 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-216ENST00000541410 A8MXK9 166 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 AGPAT2O15120 278 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 SIAH2O43255 324 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 MMP23AO75900 390 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 GPR12P47775 334 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 FHITP49789 147 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 SRSF3P84103 164 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms