RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 VSTM2LQ96N03 204 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 TXNDC17Q9BRA2 123 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 TNFRSF18Q9Y5U5 241 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 RPL36A-HNRNPH2H7BZ11 118 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 DLL1O00548 723 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 FOXB2Q5VYV0 432 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 PQLC2Q6ZP29 291 aa13.42□□□□□ -0.26
HMGA2-210ENST00000541363 METTL1Q9UBP6 276 aaKnown RBP13.42□□□□□ -0.26
HMGA2-210ENST00000541363 TRAV30A0A087WSZ9 112 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 NKX2-2O95096 273 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 SRSF5Q13243 272 aaKnown RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 MESTQ5EB52 335 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 HILPDAQ9Y5L2 63 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 CA11O75493 328 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 MPZL1O95297 269 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 RPL27AP46776 148 aaKnown RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 SH2D5Q6ZV89 423 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 NXT2Q9NPJ8 142 aaKnown RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 ECM29Q5VYK3 1845 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 OR11H12B2RN74 326 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 HAX1O00165 279 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 CEACAM5P06731 702 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 OR11H1Q8NG94 326 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 OR11H2Q8NH07 326 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 TRGC2P03986 189 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 LINC00869P0C866 280 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 MC5RP33032 325 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 PIGYQ3MUY2 71 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 NTMQ9P121 344 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 MTCL1Q9Y4B5 1905 aaKnown RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 PATE4P0C8F1 98 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 ZNF658BQ4V348 819 aaPredicted RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 C10orf111Q8N326 155 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 PF4P02776 101 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 GUSBP11Q6P575 273 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 SPNS2Q8IVW8 549 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 SRSF12Q8WXF0 261 aaKnown RBP13.41□□□□□ -0.26
HMGA2-210ENST00000541363 SHISA4Q96DD7 197 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 KCPQ6ZWJ8 1503 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 PGPA6NDG6 321 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 DDTP30046 118 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 MMP16P51512 607 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 ATP5G2Q06055 141 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 ZNF345Q14585 488 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 AMER3Q8N944 861 aa13.41□□□□□ -0.26
HMGA2-210ENST00000541363 hCG_38984A0A1B0GV85 526 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 SFTPCP11686 197 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 OR5AN1Q8NGI8 311 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 ZNF414Q96IQ9 312 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 TNFSF18Q9UNG2 199 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 RRHO14718 337 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 TDGF1P13385 188 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 SF3B5Q9BWJ5 86 aaKnown RBP13.4□□□□□ -0.26
HMGA2-210ENST00000541363 CFDP00746 253 aaPredicted RBP13.4□□□□□ -0.26
HMGA2-210ENST00000541363 SPTBP11277 2137 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 TRAV8-2A0A0B4J237 113 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 A0A1B0GTH9 108 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 FAM209BQ5JX69 171 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 DEFB124Q8NES8 71 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 PDFQ9HBH1 243 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 TRBV20OR9-2A0A075B6H5 130 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 BIVMQ86UB2 503 aa13.4□□□□□ -0.26
HMGA2-210ENST00000541363 A0A1B0GUL6 1792 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 ZNF645Q8N7E2 425 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 RGPD2P0DJD1 1756 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 C1orf174Q8IYL3 243 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 PPIAL4EA0A075B759 164 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 PPIAL4DF5H284 164 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 PPIAL4FP0DN26 164 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 NUTF2P61970 127 aaKnown RBP13.39□□□□□ -0.27
HMGA2-210ENST00000541363 ABHD1Q96SE0 405 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 TINAGQ9UJW2 476 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 PPIAL4AQ9Y536 164 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 CTLA4P16410 223 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 SAMD13Q5VXD3 122 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.39□□□□□ -0.27
HMGA2-210ENST00000541363 C7orf66A4D0T2 115 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 TMEM174Q8WUU8 243 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 APOBEC4Q8WW27 367 aaKnown RBP13.39□□□□□ -0.27
HMGA2-210ENST00000541363 SCN11AQ9UI33 1791 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 J3QT63 122 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 NKX2-8O15522 239 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 RBM11P57052 281 aaKnown RBP13.39□□□□□ -0.27
HMGA2-210ENST00000541363 MGAT2Q10469 447 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 UNQ9370/PRO34162Q6UXP9 181 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 DCTN5Q9BTE1 182 aa13.39□□□□□ -0.27
HMGA2-210ENST00000541363 MYO5AQ9Y4I1 1855 aaKnown RBP13.39□□□□□ -0.27
HMGA2-210ENST00000541363 TRAV8-6A0A0B4J262 113 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 SRIP30626 198 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 SLC6A13Q9NSD5 602 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 FOXJ2Q9P0K8 574 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 HMX2A2RU54 273 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 CLDN14O95500 239 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 COX6B1P14854 86 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 HOXA5P20719 270 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 TMEFF2Q9UIK5 374 aaPredicted RBP13.38□□□□□ -0.27
HMGA2-210ENST00000541363 PRRC2BQ5JSZ5 2229 aaKnown RBP13.38□□□□□ -0.27
HMGA2-210ENST00000541363 C9orf62Q8N4C0 152 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 OR2Y1Q8NGV0 311 aa13.38□□□□□ -0.27
HMGA2-210ENST00000541363 MS4A4AQ96JQ5 239 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms