RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 S1PR2O95136 353 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 PGA5P0DJD9 388 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 MDKP21741 143 aaPredicted RBP14.2□□□□□ -0.14
USP28-208ENST00000540438 Q3ZCU0 254 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 SAXO1Q8IYX7 474 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 LILRB2Q8N423 598 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 TCTEX1D2Q8WW35 142 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 COQ2Q96H96 371 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 SPIN2AQ99865 258 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 SPIN2BQ9BPZ2 258 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 ZNF665Q9H7R5 613 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 RALYQ9UKM9 306 aaKnown RBP14.2□□□□□ -0.14
USP28-208ENST00000540438 TM4SF5O14894 197 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 C10orf91Q5T1B1 145 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 HAPLN4Q86UW8 402 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 LRRC29Q8WV35 223 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 SOHLH1Q5JUK2 328 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 SPSB3Q6PJ21 355 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 TMPRSS5Q9H3S3 457 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 C11orf1Q9H5F2 150 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 DCAF16Q9NXF7 216 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 RBMS3Q6XE24 437 aaKnown RBP14.19□□□□□ -0.14
USP28-208ENST00000540438 OR5D13Q8NGL4 314 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 SNRNP40Q96DI7 357 aaKnown RBP14.19□□□□□ -0.14
USP28-208ENST00000540438 LOXL4Q96JB6 756 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 RPRMQ9NS64 109 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 ZNRD1Q9P1U0 126 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 PTPRQQ9UMZ3 2332 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 SYNGR2O43760 224 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 WDR82Q6UXN9 313 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 STX12Q86Y82 276 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 ARV1Q9H2C2 271 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 DKK4Q9UBT3 224 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 POLDIP2Q9Y2S7 368 aa14.19□□□□□ -0.14
USP28-208ENST00000540438 FAM90A10PA6NDY2 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A18PA6NE21 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A16PA6NEW6 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A20PA6NIJ5 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A8PA6NJQ4 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A7PA6NKC0 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A22PA8MWA6 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A12PA8MX19 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A5PA8MXJ8 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A23PA8MXZ1 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A15PP0C7V4 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A13PP0C7W8 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A14PP0C7W9 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM90A24PP0C7X0 464 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 S100GP29377 79 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 GCH1P30793 250 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 ZNF266Q14584 549 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 AVPI1Q5T686 147 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 SEM1Q6ZVN7 128 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 FAM185AQ8N0U4 392 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 SLC25A31Q9H0C2 315 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 CACNA1BQ00975 2339 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 IGHV1-18A0A0C4DH31 117 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 ERVK11-1P61568 191 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 OR5T1Q8NG75 326 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 KCNIP1Q9NZI2 227 aa14.18□□□□□ -0.14
USP28-208ENST00000540438 RBFOX3A6NFN3 312 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 LINC00473A8K010 186 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 CTXN2P0C2S0 81 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 RAB13P51153 203 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 SRPXP78539 464 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 HIST1H2BAQ96A08 127 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 GALMQ96C23 342 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 PKIBQ9C010 78 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 PITX3O75364 302 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 RAB11AP62491 216 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 RPL23AP62750 156 aaKnown RBP14.17□□□□□ -0.14
USP28-208ENST00000540438 FAM27E3Q08E93 113 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 CD177Q8N6Q3 437 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 STARD4Q96DR4 205 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 ZG16O60844 167 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 RAC2P15153 192 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 SULT1A1P50225 295 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 MOGAT3Q86VF5 341 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 OR8G5Q8NG78 346 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 GATAD1Q8WUU5 269 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 NINJ1Q92982 152 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 S100PBPQ96BU1 408 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 OR4C12Q96R67 309 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 NDRG3Q9UGV2 375 aa14.17□□□□□ -0.14
USP28-208ENST00000540438 KLK10O43240 276 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 OPN1MWP04001 364 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 OPN1MW2P0DN77 364 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 OPN1MW3P0DN78 364 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 ACSF3Q4G176 576 aaPredicted RBP14.16□□□□□ -0.14
USP28-208ENST00000540438 RPL39P5Q59GN2 51 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 SLC35B3Q9H1N7 401 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 ZNF71Q9NQZ8 489 aaPredicted RBP14.16□□□□□ -0.14
USP28-208ENST00000540438 DSCAMO60469 2012 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 IGHV2OR16-5A0A0B4J2B6 119 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 CLEC18AA5D8T8 446 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 TNFSF13O75888 250 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 BRWD1-AS2P59051 145 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 ZNF674Q2M3X9 581 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 CLEC18CQ8NCF0 446 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 AURKAIP1Q9NWT8 199 aaPredicted RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms