RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 TMEM56Q96MV1 263 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 TMEM56-RWDD3S4R434 201 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 IGKV1-39P01597 117 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 OPN1MWP04001 364 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 IGKV1D-39P04432 117 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 OPN1MW2P0DN77 364 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 OPN1MW3P0DN78 364 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 RPL30P62888 115 aaKnown RBP7.33□□□□□ -1.24
UBE3B-208ENST00000538070 FAM27E3Q08E93 113 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 SPRNQ5BIV9 151 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 NMSQ5H8A3 153 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 AVPI1Q5T686 147 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 INO80CQ6PI98 192 aaPredicted RBP7.33□□□□□ -1.24
UBE3B-208ENST00000538070 Q6ZR03 302 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 BHLHA15Q7RTS1 189 aaPredicted RBP7.33□□□□□ -1.24
UBE3B-208ENST00000538070 LRTM2Q8N967 370 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 OR8G5Q8NG78 346 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 ZDHHC16Q969W1 377 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 S100PBPQ96BU1 408 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 PKIBQ9C010 78 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 ASCL3Q9NQ33 180 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 CLCF1Q9UBD9 225 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 CACNA1BQ00975 2339 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 RELNP78509 3460 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 C17orf98A8MV24 154 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 S1PR2O95136 353 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 IGKV1-5P01602 117 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 PGA5P0DJD9 388 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 MUCL1Q96DR8 90 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 GINS3Q9BRX5 216 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 TACC2O95359 2948 aa7.33□□□□□ -1.24
UBE3B-208ENST00000538070 FCGR3BO75015 233 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 SS18L1O75177 396 aaPredicted RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 SNRPEP62304 92 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ARL16Q0P5N6 197 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ACSF3Q4G176 576 aaPredicted RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ZNF497Q6ZNH5 498 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 WFDC8Q8IUA0 241 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 WDR31Q8NA23 367 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 OR5D13Q8NGL4 314 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 SMCO4Q9NRQ5 59 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 KPTNQ9Y664 436 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 PTPRQQ9UMZ3 2332 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 KALRNO60229 2985 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 GALR2O43603 387 aaPredicted RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 UBE2KP61086 200 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 CYB561D1Q8N8Q1 229 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 CXXC4Q9H2H0 198 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ZNF665Q9H7R5 613 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 LIN7CQ9NUP9 197 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 TNCP24821 2201 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 IGHV2OR16-5A0A0B4J2B6 119 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 IGHV1-18A0A0C4DH31 117 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 RBFOX3A6NFN3 312 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 PRR33A8MZF0 331 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 CRYAAP02489 173 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 TAGLN2P37802 199 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 RPS10P46783 165 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 GNG10P50151 68 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ERVFRD-1P60508 538 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 RND3P61587 244 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 ID3Q02535 119 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 BAXQ07812 192 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 WDR82Q6UXN9 313 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 H2BFWTQ7Z2G1 175 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 SNIP1Q8TAD8 396 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 OR2V2Q96R30 315 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 SLC35B3Q9H1N7 401 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 GP6Q9HCN6 339 aa7.32□□□□□ -1.24
UBE3B-208ENST00000538070 RALYQ9UKM9 306 aaKnown RBP7.32□□□□□ -1.24
UBE3B-208ENST00000538070 CD5P06127 495 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 EGR1P18146 543 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 MDKP21741 143 aaPredicted RBP7.31□□□□□ -1.24
UBE3B-208ENST00000538070 PAX9P55771 341 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 Q8IYB0 196 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 CISD2Q8N5K1 135 aaKnown RBP7.31□□□□□ -1.24
UBE3B-208ENST00000538070 STARD4Q96DR4 205 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 ATP5SQ99766 215 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 SLC25A22Q9H936 323 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 M0R1X1 148 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 PITX3O75364 302 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 PRDX2P32119 198 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 CCL8P80075 99 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 SMIM21Q3B7S5 101 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 ZNF585BQ52M93 769 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 ZNF343Q6P1L6 599 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 ACP7Q6ZNF0 438 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 COQ2Q96H96 371 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 OR4C12Q96R67 309 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 RPRMQ9NS64 109 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 CARHSP1Q9Y2V2 147 aaKnown RBP7.31□□□□□ -1.24
UBE3B-208ENST00000538070 WSB1Q9Y6I7 421 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 MAP1AP78559 2803 aaPredicted RBP7.31□□□□□ -1.24
UBE3B-208ENST00000538070 WNK2Q9Y3S1 2297 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 CHD3Q12873 2000 aaKnown RBP7.31□□□□□ -1.24
UBE3B-208ENST00000538070 NUDT19A8MXV4 375 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 C1orf196B1AJZ1 125 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 SPINT2O43291 252 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 ZG16O60844 167 aa7.31□□□□□ -1.24
UBE3B-208ENST00000538070 TUBG1P23258 451 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms