RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SPSB1Q96BD6 273 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 C10orf35Q96D05 121 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 ADAT3Q96EY9 351 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 CCDC140Q96MF4 163 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 NR1H4Q96RI1 486 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 APOL4Q9BPW4 351 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 KCTD14Q9BQ13 255 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 CENPOQ9BU64 300 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 RNF126Q9BV68 326 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 MAP6D1Q9H9H5 199 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 MLXQ9UH92 298 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 UBQLN2Q9UHD9 624 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 V9GYY5 206 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 TNFRSF11BO00300 401 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ORC5O43913 435 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 RBMXL2O75526 392 aaKnown RBP4.7□□□□□ -1.66
CD44-237ENST00000534082 CCNB2O95067 398 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 IFNA10P01566 189 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 SLC2A5P22732 501 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 CBLN1P23435 193 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 HLA-DMBP28068 263 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 EXOSC2Q13868 293 aaKnown RBP4.7□□□□□ -1.66
CD44-237ENST00000534082 MED22Q15528 200 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 Q5VSD8 79 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 METTL21CQ5VZV1 264 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ZNF322Q6U7Q0 402 aaPredicted RBP4.7□□□□□ -1.66
CD44-237ENST00000534082 BTNL8Q6UX41 500 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ZNF833PQ6ZTB9 187 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 CROCCP2Q86T23 111 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 CPOQ8IVL8 374 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ODF3L1Q8IXM7 274 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 CCDC54Q8NEL0 328 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 OR11H2Q8NH07 326 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 CCDC107Q8WV48 283 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 MCUR1Q96AQ8 359 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 PYURFQ96I23 114 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 USMG5Q96IX5 58 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ABHD14AQ9BUJ0 271 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 ADI1Q9BV57 179 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 DPCDQ9BVM2 203 aaPredicted RBP4.7□□□□□ -1.66
CD44-237ENST00000534082 HRH4Q9H3N8 390 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 METTL1Q9UBP6 276 aaKnown RBP4.7□□□□□ -1.66
CD44-237ENST00000534082 TAGLN3Q9UI15 199 aa4.7□□□□□ -1.66
CD44-237ENST00000534082 A0A0G2JND7 137 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 H3BN98 237 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 SLC22A1O15245 554 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 SPINT2O43291 252 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 KRT36O76013 467 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 RPP14O95059 124 aaKnown RBP4.69□□□□□ -1.66
CD44-237ENST00000534082 S1PR2O95136 353 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 TMEM225BP0DP42 221 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 DBTP11182 482 aaKnown RBP4.69□□□□□ -1.66
CD44-237ENST00000534082 ZNF20P17024 532 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 OR3A3P47888 321 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 LGALS7P47929 136 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 CXCR4P61073 352 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 ACTR3P61158 418 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 IL13RA2Q14627 380 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 FXYD3Q14802 87 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 MICAQ29983 383 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 TMEM30BQ3MIR4 351 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 PIGYQ3MUY2 71 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 ODF3L2Q3SX64 289 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 STEAP3Q658P3 488 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 GLYATQ6IB77 296 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 UTS2BQ765I0 119 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 SPATA12Q7Z6I5 190 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 LINC00596Q86U02 117 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 UBE2DNLQ8IWF7 75 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 PRR18Q8N4B5 295 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 OR2C3Q8N628 320 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 SUMF2Q8NBJ7 301 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 OR4A5Q8NH83 315 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 KCNG3Q8TAE7 436 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 GHSRQ92847 366 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 CNN2Q99439 309 aaKnown RBP4.69□□□□□ -1.66
CD44-237ENST00000534082 COA4Q9NYJ1 87 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 ZNF581Q9P0T4 197 aa4.69□□□□□ -1.66
CD44-237ENST00000534082 ZNF230Q9UIE0 474 aaPredicted RBP4.69□□□□□ -1.66
CD44-237ENST00000534082 SAA2-SAA4A0A096LPE2 208 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 TRAV25A0A0B4J276 109 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 TMEM213A2RRL7 107 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 CCDC182A6NF36 153 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 MPTX1A8MV57 137 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 B2RBV5 119 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 PPP5D1E7EU14 171 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 AIPO00170 330 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 TUSC2O75896 110 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 FADS2O95864 444 aaKnown RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 HLA-AP01891 365 aaKnown RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 HBZP02008 142 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 CD74P04233 296 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 SCTP09683 121 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 UBCP0CG48 685 aaKnown RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 SAA2P0DJI9 122 aaPredicted RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 S100A5P33763 92 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 HMGA2P52926 109 aa4.68□□□□□ -1.66
CD44-237ENST00000534082 RPL11P62913 178 aaKnown RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 SSBP2P81877 361 aaPredicted RBP4.68□□□□□ -1.66
CD44-237ENST00000534082 PPP1R8Q12972 351 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms