RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TRBV6-7A0A0A0MS04 114 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 A0A0A6YYH2 397 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 A6NJ64 397 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 RAB29O14966 203 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 ST8SIA5O15466 376 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 FABP7O15540 132 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 FGF16O43320 207 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 SSX5O60225 188 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 GABARAPO95166 117 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 GSTT2P0CG29 244 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 GSTT2BP0CG30 244 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 LSAMPQ13449 338 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 HNF4GQ14541 408 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 KIR2DS1Q14954 304 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 ABCA11PQ4W5N1 156 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 IGSF11Q5DX21 431 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 FAM71F2Q6NXP2 309 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 KLHDC1Q8N7A1 406 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 OR2T10Q8NGZ9 312 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 NABP2Q9BQ15 211 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 NAA50Q9GZZ1 169 aaKnown RBP10.31□□□□□ -0.76
VPS28-216ENST00000533806 DCSTAMPQ9H295 470 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 MOB4Q9Y3A3 225 aa10.31□□□□□ -0.76
VPS28-216ENST00000533806 MOSP00540 346 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 TMEM11P17152 192 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 SERPINB10P48595 397 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 VBP1P61758 197 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 MRPS15P82914 257 aaKnown RBP10.3□□□□□ -0.76
VPS28-216ENST00000533806 HES1Q14469 280 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 PNLIPRP3Q17RR3 467 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 TMEM95Q3KNT9 176 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 Q8N9W7 124 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 EDARADDQ8WWZ3 215 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 MAFIPQ8WZ33 124 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 MRPL20Q9BYC9 149 aaKnown RBP10.3□□□□□ -0.76
VPS28-216ENST00000533806 RDH8Q9NYR8 311 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 PIPOXQ9P0Z9 390 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 MEGF8Q7Z7M0 2845 aa10.3□□□□□ -0.76
VPS28-216ENST00000533806 TMEM235A6NFC5 223 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 SH2D7A6NKC9 451 aaPredicted RBP10.29□□□□□ -0.76
VPS28-216ENST00000533806 LPLP06858 475 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 CT45A6P0DMU7 189 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 CT45A5P0DMU8 189 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 CT45A7P0DMV0 189 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 PITPNAQ00169 270 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 ARFRP1Q13795 201 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 RPL39P5Q59GN2 51 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 FAM71E2Q8N5Q1 922 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 OR8H1Q8NGG4 311 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 NUDCD2Q8WVJ2 157 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 KCTD12Q96CX2 325 aaKnown RBP10.29□□□□□ -0.76
VPS28-216ENST00000533806 ABHD14BQ96IU4 210 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 RITA1Q96K30 269 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 AUNIPQ9H7T9 357 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 GAB2Q9UQC2 676 aa10.29□□□□□ -0.76
VPS28-216ENST00000533806 TRAV18A0A075B6X5 111 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 HSPA12AO43301 675 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 XRCC3O43542 346 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 IGHG2P01859 326 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 VSIG10L2P0DP72 767 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 TALDO1P37837 337 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 VDAC2P45880 294 aaPredicted RBP10.28□□□□□ -0.76
VPS28-216ENST00000533806 F2RL1P55085 397 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 GPR107Q5VW38 600 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 OR5AN1Q8NGI8 311 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 ST6GALNAC5Q9BVH7 336 aa10.28□□□□□ -0.76
VPS28-216ENST00000533806 BET1O15155 118 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 TCTEX1D4Q5JR98 221 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 UBE2NLQ5JXB2 153 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 HIST2H2BDQ6DRA6 164 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 H1FOOQ8IZA3 346 aaPredicted RBP10.27□□□□□ -0.77
VPS28-216ENST00000533806 OR10J5Q8NHC4 309 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 S1PR3Q99500 378 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 DIABLOQ9NR28 239 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 LIN7CQ9NUP9 197 aaKnown RBP10.27□□□□□ -0.77
VPS28-216ENST00000533806 RNF150Q9ULK6 438 aa10.27□□□□□ -0.77
VPS28-216ENST00000533806 LINC01548A6NM66 108 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 ADARB2-AS1A8MUL3 147 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 H0YJW9 148 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 OR8U9P0C7N5 309 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 CD28P10747 220 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 GNG2P59768 71 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 CD83Q01151 205 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 CNIH2Q6PI25 160 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 HOGA1Q86XE5 327 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 SAMD12Q8N8I0 201 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.26□□□□□ -0.77
VPS28-216ENST00000533806 NPBQ8NG41 125 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 OR8U1Q8NH10 309 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 PHF21AQ96BD5 680 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 S100A16Q96FQ6 103 aaKnown RBP10.26□□□□□ -0.77
VPS28-216ENST00000533806 C5orf30Q96GV9 206 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 CMTM3Q96MX0 182 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 ANXA10Q9UJ72 324 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 WNK1Q9H4A3 2382 aa10.26□□□□□ -0.77
VPS28-216ENST00000533806 OR5H14A6NHG9 310 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 NCBP2LA6PVI3 153 aaKnown RBP10.25□□□□□ -0.77
VPS28-216ENST00000533806 M0QZ24 198 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 NDUFA3O95167 84 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 EIF4EP06730 217 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms