RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 PARP14Q460N5 1801 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 MYLKQ15746 1914 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 KNL1Q8NG31 2342 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 ZNF469Q96JG9 3925 aaPredicted RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 FAM240AA0A1B0GVK7 77 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 IQCF5A8MTL0 148 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 E7EWF7 191 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 M0QZ92 97 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 M0R1B8 84 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 KDELR3O43731 214 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 TRAPPC6AO75865 159 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 ETHE1O95571 254 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 TPM3P06753 285 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 NEFHP12036 1026 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 CCNOP22674 350 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 GPR4P46093 362 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 KCNJ3P48549 501 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 PSMC5P62195 406 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 UBE2IP63279 158 aaKnown RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 COTL1Q14019 142 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 ATP6V1FQ16864 119 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 SLC25A25Q6KCM7 469 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 SETD3Q86TU7 594 aaPredicted RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 CD302Q8IX05 232 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 C3orf22Q8N5N4 141 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 CCNYL1Q8N7R7 359 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 OR8S1Q8NH09 359 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 OR51A7Q8NH64 312 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 KIAA1143Q96AT1 154 aaPredicted RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 STACQ99469 402 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 ACBD6Q9BR61 282 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 SHCBP1LQ9BZQ2 653 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 TM6SF2Q9BZW4 377 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 HDHD2Q9H0R4 259 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 WDR55Q9H6Y2 383 aaPredicted RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 IL20Q9NYY1 176 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 IFNKQ9P0W0 207 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 KLF13Q9Y2Y9 288 aaPredicted RBP1.56□□□□□ -2.16
CD44-233ENST00000531141 INSIG2Q9Y5U4 225 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.56□□□□□ -2.16
CD44-233ENST00000531141 MXRA5Q9NR99 2828 aa1.56□□□□□ -2.16
CD44-233ENST00000531141 IGHV3-21A0A0B4J1V1 117 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 LEUTXA8MZ59 168 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 K7EPK0 472 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ZNF593O00488 134 aaPredicted RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 CCL16O15467 120 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 GATCO43716 136 aaKnown RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 ALOX12BO75342 701 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 CRTAPO75718 401 aaPredicted RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 CDK14O94921 469 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 IGHMP01871 453 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 KRT7P08729 469 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 CCL2P13500 99 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ZNF708P17019 499 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 PRPS1L1P21108 318 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ADORA1P30542 326 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 DEKP35659 375 aaKnown RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 P2RY2P41231 377 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 SNAP25P60880 206 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 XRCC4Q13426 336 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ZNF404Q494X3 552 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ATP6AP1LQ52LC2 224 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 CLLU1OSQ5K130 101 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 FAM27D1Q5T7N8 215 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 SYT6Q5T7P8 510 aaPredicted RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 HES3Q5TGS1 186 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 EPGNQ6UW88 154 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 Q6ZQT7 251 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 RBM45Q8IUH3 476 aaKnown RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 AMN1Q8IY45 258 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 FAM9CQ8IZT9 166 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 C17orf78Q8N4C9 275 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 EIF4E3Q8N5X7 224 aaKnown RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 DEFB119Q8N690 84 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 DNAAF3Q8N9W5 541 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 FBXO36Q8NEA4 188 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 BPIFB6Q8NFQ5 453 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 TSTD1Q8NFU3 115 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 MUC7Q8TAX7 377 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 DDI1Q8WTU0 396 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 CCDC12Q8WUD4 166 aaPredicted RBP1.55□□□□□ -2.16
CD44-233ENST00000531141 SMIM8Q96KF7 97 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 RILPQ96NA2 401 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 OR2M4Q96R27 311 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 CYTH2Q99418 400 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 SRRQ9GZT4 340 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ASB7Q9H672 318 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 FLVCR2Q9UPI3 526 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 AP3M1Q9Y2T2 418 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 ICOSQ9Y6W8 199 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 MYH1P12882 1939 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 DYSFO75923 2080 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 RYR1P21817 5038 aa1.55□□□□□ -2.16
CD44-233ENST00000531141 NAV1Q8NEY1 1877 aa1.54□□□□□ -2.16
CD44-233ENST00000531141 MYO16Q9Y6X6 1858 aa1.54□□□□□ -2.16
CD44-233ENST00000531141 HELZP42694 1942 aaKnown RBP1.54□□□□□ -2.16
CD44-233ENST00000531141 CEP192Q8TEP8 1941 aa1.54□□□□□ -2.16
CD44-233ENST00000531141 IGHV3-43A0A0B4J1X8 118 aa1.54□□□□□ -2.16
CD44-233ENST00000531141 ZNF729A6NN14 1252 aaPredicted RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms