RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FBXW9Q5XUX1 488 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 DRAM1Q8N682 238 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 OR13D1Q8NGV5 346 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 ABHD5Q8WTS1 349 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 CA5BP1Q8WTZ4 195 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 PRO1933Q9H354 126 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 OR5H1A6NKK0 313 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 SP1P08047 785 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 CEACAM6P40199 344 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 NANOS1Q8WY41 292 aaKnown RBP16.25■□□□□ 0.19
VPS28-213ENST00000530983 WDR61Q9GZS3 305 aaKnown RBP16.25■□□□□ 0.19
VPS28-213ENST00000530983 ELOA3CA0A087WX78 387 aaPredicted RBP16.24■□□□□ 0.19
VPS28-213ENST00000530983 C21orf140B9A014 251 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 CELA3BP08861 270 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 FABP4P15090 132 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 SERF2P84101 59 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 SPANXN5Q5MJ07 72 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 Q8IYB0 196 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 WIPI2Q9Y4P8 454 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 GTF3C1Q12789 2109 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 TRGC1P0CF51 173 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 NDUFB7P17568 137 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 PKIAP61925 76 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 ZNF146Q15072 292 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 ACSF3Q4G176 576 aaPredicted RBP16.24■□□□□ 0.19
VPS28-213ENST00000530983 FRZBQ92765 325 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 OR4C12Q96R67 309 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 POLDIP2Q9Y2S7 368 aa16.24■□□□□ 0.19
VPS28-213ENST00000530983 IGHV3-64DA0A0J9YX35 117 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 CDIPTO14735 213 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 SLC31A2O15432 143 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 PTBP3O95758 552 aaKnown RBP16.23■□□□□ 0.19
VPS28-213ENST00000530983 PGA5P0DJD9 388 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 PNRC1Q12796 327 aaPredicted RBP16.23■□□□□ 0.19
VPS28-213ENST00000530983 TBC1D28Q2M2D7 210 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 FGFRL1Q8N441 504 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 MDS2Q8NDY4 140 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 OR2J1Q9GZK6 312 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 A0A087X0M5 115 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 A0A1B0GX30 115 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 SMPD2O60906 423 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 ERVS71-1P61550 626 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 ALKBH6Q3KRA9 238 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 TMEM41BQ5BJD5 291 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 PARD6GQ9BYG4 376 aaPredicted RBP16.23■□□□□ 0.19
VPS28-213ENST00000530983 TMEM242Q9NWH2 141 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 IL17BQ9UHF5 180 aa16.23■□□□□ 0.19
VPS28-213ENST00000530983 KLF13Q9Y2Y9 288 aaPredicted RBP16.23■□□□□ 0.19
VPS28-213ENST00000530983 NXPH2O95156 264 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 SLC10A1Q14973 349 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 SDF2L1Q9HCN8 221 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 CYB5R3P00387 301 aaPredicted RBP16.22■□□□□ 0.19
VPS28-213ENST00000530983 MPLP40238 635 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 RND2P52198 227 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 ELLP55199 621 aaPredicted RBP16.22■□□□□ 0.19
VPS28-213ENST00000530983 TAF15Q92804 592 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS28-213ENST00000530983 WDYHV1Q96HA8 205 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 P2RX4Q99571 388 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 DEFB127Q9H1M4 99 aa16.22■□□□□ 0.19
VPS28-213ENST00000530983 UBE2L5PA0A1B0GUS4 154 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 MAP1LC3B2A6NCE7 125 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 KLRC4-KLRK1H3BQV0 150 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 SH2D1BO14796 132 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 TAS2R60P59551 318 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 PPP1CBP62140 327 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 SLC38A11Q08AI6 406 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 TMEM14EPQ6UXP3 125 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.21■□□□□ 0.19
VPS28-213ENST00000530983 MAP1LC3BQ9GZQ8 125 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 VAX2Q9UIW0 290 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 TECTAO75443 2155 aa16.21■□□□□ 0.19
VPS28-213ENST00000530983 FAM90A26D6RGX4 464 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 TSTD3H0UI37 97 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 J3QW42 95 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 RAMP3O60896 148 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 SELEP16581 610 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 CEBPDP49716 269 aaPredicted RBP16.2■□□□□ 0.18
VPS28-213ENST00000530983 MRGPRGQ86SM5 289 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 PINX1Q96BK5 328 aaKnown RBP16.2■□□□□ 0.18
VPS28-213ENST00000530983 FAM210BQ96KR6 192 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 RBKSQ9H477 322 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 USF3Q68DE3 2245 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 CEBPZOSA8MTT3 80 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 CLDN34H7C241 214 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 PSPNO60542 156 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 IFNA10P01566 189 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 IGKV1D-33P01593 117 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 IGKV1-33P01594 117 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 TNFRSF9Q07011 255 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 ZNF124Q15973 351 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 C4orf17Q53FE4 359 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 TMEM164Q5U3C3 297 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 OR8G2PQ6IF36 304 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 FAM180AQ6UWF9 173 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 C1orf87Q8N0U7 546 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 SPRR3Q9UBC9 169 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 KNTC1P50748 2209 aa16.2■□□□□ 0.18
VPS28-213ENST00000530983 TGOLN2O43493 480 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 PLA2G5P39877 138 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 ZNF766Q5HY98 468 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms