RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TCF23Q7RTU1 214 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 OR8B3Q8NGG8 313 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 H1FXQ92522 213 aaKnown RBP17.48■□□□□ 0.39
VPS28-212ENST00000530836 ZNF714Q96N38 554 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 OR8B2Q96RD0 313 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 PDCD10Q9BUL8 212 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 C19orf12Q9NSK7 152 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 GFOD1Q9NXC2 390 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 IDI2-AS1Q9NZ38 188 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 KCNS2Q9ULS6 477 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 H0Y980 276 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 RAB7AP51149 207 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 FGL1Q08830 312 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 CLEC12BQ2HXU8 276 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 ZNF525Q8N782 197 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 WFDC11Q8NEX6 87 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 GLYATL2Q8WU03 294 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 NEIL1Q96FI4 390 aaPredicted RBP17.47■□□□□ 0.39
VPS28-212ENST00000530836 TMEM222Q9H0R3 208 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 METTL8Q9H825 291 aaKnown RBP17.47■□□□□ 0.39
VPS28-212ENST00000530836 VPS13CQ709C8 3753 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 A0A1W2PPH5 198 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 SIX6O95475 246 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 IFNA21P01568 189 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 IGLV2-14P01704 120 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 F2RP25116 425 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 DSCR9P59020 149 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 Q3ZCU0 254 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 TMEM200BQ69YZ2 307 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 PARP12Q9H0J9 701 aaKnown RBP17.47■□□□□ 0.39
VPS28-212ENST00000530836 OR2D2Q9H210 308 aa17.47■□□□□ 0.39
VPS28-212ENST00000530836 IGHV3-43A0A0B4J1X8 118 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 C5orf51A6NDU8 294 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 FCN3O75636 299 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 IGHV3-43DP0DP04 118 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 AVPI1Q5T686 147 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 DCAF12L2Q5VW00 463 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 SPNS3Q6ZMD2 512 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 ZNF841Q6ZN19 808 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 DRAM1Q8N682 238 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 IL22RA2Q969J5 263 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 MSI2Q96DH6 328 aaKnown RBP17.46■□□□□ 0.39
VPS28-212ENST00000530836 TMEM56Q96MV1 263 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 AGMATQ9BSE5 352 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 LIN7CQ9NUP9 197 aaKnown RBP17.46■□□□□ 0.39
VPS28-212ENST00000530836 TMEM56-RWDD3S4R434 201 aa17.46■□□□□ 0.39
VPS28-212ENST00000530836 DUXBA0A1W2PPF3 345 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 MEX3AA1L020 520 aaKnown RBP17.45■□□□□ 0.38
VPS28-212ENST00000530836 UCP1P25874 307 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 GPR6P46095 362 aaPredicted RBP17.45■□□□□ 0.38
VPS28-212ENST00000530836 LTC4SQ16873 150 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 SP6Q3SY56 376 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 CLEC2AQ6UVW9 174 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 HEPN1Q6WQI6 88 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 FGFRL1Q8N441 504 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 TP53RKQ96S44 253 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 NMES1Q9C002 83 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 RPUSD1Q9UJJ7 312 aaKnown RBP17.45■□□□□ 0.38
VPS28-212ENST00000530836 GAB2Q9UQC2 676 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 DSCAML1Q8TD84 2053 aa17.45■□□□□ 0.38
VPS28-212ENST00000530836 FAM25EA8MYX2 175 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 OMGP23515 440 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 PDLIM4P50479 330 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 ZNF273Q14593 569 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 TCTEX1D1Q8N7M0 179 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 FAM168AQ92567 244 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 Q96MF0 132 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 PATZ1Q9HBE1 687 aaKnown RBP17.44■□□□□ 0.38
VPS28-212ENST00000530836 COMMD9Q9P000 198 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 PSG11Q9UQ72 335 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 TMED3Q9Y3Q3 217 aa17.44■□□□□ 0.38
VPS28-212ENST00000530836 ITPR3Q14573 2671 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 CCSO14618 274 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 CDS2O95674 445 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 CATR1Q13166 79 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 ZNF66Q6ZN08 573 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 C18orf12Q96KH6 178 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 FAM212BQ9NTI7 297 aaPredicted RBP17.43■□□□□ 0.38
VPS28-212ENST00000530836 C13orf42A0A1B0GVH6 325 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 SMLR1H3BR10 107 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 TNFSF12O43508 249 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 ADAP1O75689 374 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 GPR12P47775 334 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 ZNF695Q8IW36 515 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.43■□□□□ 0.38
VPS28-212ENST00000530836 C8orf46Q8TAG6 207 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 C10orf105Q8TEF2 133 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 HSD17B10Q99714 261 aaKnown RBP17.43■□□□□ 0.38
VPS28-212ENST00000530836 ABHD14AQ9BUJ0 271 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 PRR13Q9NZ81 148 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 RNF150Q9ULK6 438 aa17.43■□□□□ 0.38
VPS28-212ENST00000530836 NDUFS8O00217 210 aa17.42■□□□□ 0.38
VPS28-212ENST00000530836 SERPINE2P07093 398 aa17.42■□□□□ 0.38
VPS28-212ENST00000530836 HOXB5P09067 269 aa17.42■□□□□ 0.38
VPS28-212ENST00000530836 NKX2-5P52952 324 aaPredicted RBP17.42■□□□□ 0.38
VPS28-212ENST00000530836 WDR25Q64LD2 544 aaPredicted RBP17.42■□□□□ 0.38
VPS28-212ENST00000530836 C2orf50Q96LR7 162 aa17.42■□□□□ 0.38
VPS28-212ENST00000530836 F5H0A9 414 aaPredicted RBP17.41■□□□□ 0.38
VPS28-212ENST00000530836 ST8SIA5O15466 376 aa17.41■□□□□ 0.38
VPS28-212ENST00000530836 RBP4P02753 201 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms