RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-223	ENST00000529986	HARBI1	Q96MB7	349 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	AQP10	Q96PS8	301 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	PRSS27	Q9BQR3	290 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	PIN1P1	O15428	100 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	GCM2	O75603	506 aa	Predicted RBP	6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	PRF1	P14222	555 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	SSTR5	P35346	364 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	NPBWR2	P48146	333 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	HOXA4	Q00056	320 aa	Predicted RBP	6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	FOXC1	Q12948	553 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	ADIPOQ	Q15848	244 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	TEX30	Q5JUR7	227 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	VAX1	Q5SQQ9	334 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR2I1P	Q8NGU4	316 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	TNFRSF19	Q9NS68	423 aa		6.63	□□□□□ -1.35
CTNND1-223	ENST00000529986	FOXL2	P58012	376 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RTP5	Q14D33	572 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SPINK14	Q6IE38	97 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	BIVM	Q86UB2	503 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	MOGAT3	Q86VF5	341 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	TUSC5	Q8IXB3	177 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	TMEM183A	Q8IXX5	376 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	FBLIM1	Q8WUP2	373 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	ABHD14B	Q96IU4	210 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RNF122	Q9H9V4	155 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RGPD3	A6NKT7	1758 aa	Predicted RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SCN3A	Q9NY46	2000 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	MT-ND6	P03923	174 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	FOLR2	P14207	255 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	LSM6	P62312	80 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SPEM1	Q8N4L4	309 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	TAF15	Q92804	592 aa	Known RBP eCLIP	6.62	□□□□□ -1.35	3e-8	■■■□□ 14.9
CTNND1-223	ENST00000529986	SSBP3	Q9BWW4	388 aa	Predicted RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	C5orf66	Q9H5L9	145 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	BEX4	Q9NWD9	120 aa	Predicted RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR51B2	Q9Y5P1	312 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	C7orf71	A4D174	169 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986		A8MWL6	223 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	PPIH	O43447	177 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SYNGR1	O43759	233 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	AMY1A	P04745	511 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR4A8	P0C604	315 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	CKS2	P33552	79 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	GFRA1	P56159	465 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	KLF3	P57682	345 aa	Predicted RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RNPS1	Q15287	305 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	TM4SF20	Q53R12	229 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	IMMP2L	Q96T52	175 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR2H1	Q9GZK4	316 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SF3B6	Q9Y3B4	125 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	MCM3AP	O60318	1980 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986		H3BTX0	84 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	IGKV1D-16	P01601	117 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RNASE1	P07998	156 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	DANCR	P0C864	163 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RBM11	P57052	281 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	C2orf68	Q2NKX9	166 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	TMEM136	Q6ZRR5	245 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	WFDC3	Q8IUB2	231 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RPP25	Q9BUL9	199 aa	Known RBP	6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	RTN4R	Q9BZR6	473 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	KLK15	Q9H2R5	256 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	THYN1	Q9P016	225 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	SMCHD1	A6NHR9	2005 aa		6.62	□□□□□ -1.35
CTNND1-223	ENST00000529986	EML2	O95834	649 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	HLA-DQA1	P01909	254 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	EPHA8	P29322	1005 aa	Predicted RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	GGTLC2	Q14390	218 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	HIKESHI	Q53FT3	197 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	LSM10	Q969L4	123 aa	Known RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR8B2	Q96RD0	313 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	TMEM222	Q9H0R3	208 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	CISD1	Q9NZ45	108 aa	Known RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986		A0A1B0GV72	72 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	MSGN1	A6NI15	193 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	ARL14EPL	P0DKL9	152 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	PRRX1	P54821	245 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	PRSS53	Q2L4Q9	553 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	OR8G5	Q8NG78	346 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	VSTM2A	Q8TAG5	236 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	ZDHHC16	Q969W1	377 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	GPR146	Q96CH1	333 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	GABRG3	Q99928	467 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	SMOC1	Q9H4F8	434 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	NPVF	Q9HCQ7	196 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	PRND	Q9UKY0	176 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	TRIP11	Q15643	1979 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986		A0A1W2PPV9	198 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	TMEM189	A5PLL7	270 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	CGB1	A6NKQ9	187 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986		B4E171	279 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	CRYBB3	P26998	211 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	RBPMS2	Q6ZRY4	209 aa	Known RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	SLC25A40	Q8TBP6	338 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	QTRT1	Q9BXR0	403 aa	Known RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	PLA2G2F	Q9BZM2	168 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	NPDC1	Q9NQX5	325 aa	Predicted RBP	6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	SHISA3	A0PJX4	238 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	PGP	A6NDG6	321 aa		6.61	□□□□□ -1.35
CTNND1-223	ENST00000529986	DPRX	A6NFQ7	191 aa		6.61	□□□□□ -1.35

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms