RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ESPL1Q14674 2120 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 ZNF705FA8MVS1 300 aaPredicted RBP12.07□□□□□ -0.48
USP48-213ENST00000529637 LILRA1O75019 489 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 HPRT1P00492 218 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 CELA3AP09093 270 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 ZNF705DP0CH99 300 aaPredicted RBP12.07□□□□□ -0.48
USP48-213ENST00000529637 ZNF705BP0CI00 300 aaPredicted RBP12.07□□□□□ -0.48
USP48-213ENST00000529637 UCP1P25874 307 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 BATFQ16520 125 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 TGIF2LYQ8IUE0 185 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 UBALD2Q8IYN6 164 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 RPP25LQ8N5L8 163 aaKnown RBP12.07□□□□□ -0.48
USP48-213ENST00000529637 TBX15Q96SF7 602 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 PARLQ9H300 379 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 OR6C3Q9NZP0 311 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 NAGKQ9UJ70 344 aa12.07□□□□□ -0.48
USP48-213ENST00000529637 BOKQ9UMX3 212 aaPredicted RBP12.07□□□□□ -0.48
USP48-213ENST00000529637 C3orf80F5H4A9 247 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 HRASP01112 189 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 BCL3P20749 454 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 MRPS11P82912 194 aaKnown RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 MEF2BQ02080 365 aaPredicted RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 ARSJQ5FYB0 599 aaPredicted RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 CST9LP1Q5W188 147 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 OR51H1Q8NH63 302 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 LHX4Q969G2 390 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 OPN3Q9H1Y3 402 aaPredicted RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 MRPS18CQ9Y3D5 142 aaKnown RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 NCKAP5O14513 1909 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 KBTBD11O94819 623 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 IGHEP01854 428 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 RPLP1P05386 114 aaKnown RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 DEFA4P12838 97 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 CHRNA7P36544 502 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 FOXG1P55316 489 aaPredicted RBP12.06□□□□□ -0.48
USP48-213ENST00000529637 ABHD17BQ5VST6 288 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 Q6ZSR3 168 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 WDR5BQ86VZ2 330 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 TUSC5Q8IXB3 177 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 ZNF525Q8N782 197 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 IL22RA2Q969J5 263 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 IL36RNQ9UBH0 155 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 CBY1Q9Y3M2 126 aa12.06□□□□□ -0.48
USP48-213ENST00000529637 IGKV1-6A0A0C4DH72 117 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 GCH1P30793 250 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 TFPI2P48307 235 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 CNN1P51911 297 aaKnown RBP12.05□□□□□ -0.48
USP48-213ENST00000529637 PLGLB1Q02325 96 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 C3AR1Q16581 482 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 VASH2Q86V25 355 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 OR2T10Q8NGZ9 312 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 R4GN57 208 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 SERPINA7P05543 415 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 PRDX4Q13162 271 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 ASCL4Q6XD76 172 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 CENPVQ7Z7K6 275 aaPredicted RBP12.05□□□□□ -0.48
USP48-213ENST00000529637 TMEM105Q8N8V8 129 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 MED13Q9UHV7 2174 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 SYNGR4O95473 234 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 RIPPLY2Q5TAB7 128 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 TMEM211Q6ICI0 200 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 PRR18Q8N4B5 295 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 MRPL30Q8TCC3 161 aaKnown RBP12.05□□□□□ -0.48
USP48-213ENST00000529637 OR51I2Q9H344 312 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 PLSCR2Q9NRY7 297 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 ZNF391Q9UJN7 358 aa12.05□□□□□ -0.48
USP48-213ENST00000529637 CACNA1DQ01668 2161 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 EGR1P18146 543 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 CCKARP32238 428 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 TMEM42Q69YG0 159 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 ZNF573Q86YE8 665 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 MCEMP1Q8IX19 187 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 MS4A10Q96PG2 267 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 SLC25A22Q9H936 323 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 LPAR2Q9HBW0 351 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 PGLYRP1O75594 196 aaPredicted RBP12.04□□□□□ -0.48
USP48-213ENST00000529637 PSG2P11465 335 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 BMP5P22003 454 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 OR4F5Q8NH21 305 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 ABHD14BQ96IU4 210 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 OR4C12Q96R67 309 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 OR4F4Q96R69 305 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 SLC39A9Q9NUM3 307 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 SVILO95425 2214 aa12.04□□□□□ -0.48
USP48-213ENST00000529637 GRIFINA4D1Z8 144 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 C1QTNF9BB2RNN3 333 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 TRAPPC2LH3BP13 241 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 HS3ST1O14792 307 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 SSPNQ14714 243 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 OR8B8Q15620 311 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 TCF23Q7RTU1 214 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 ZDHHC23Q8IYP9 409 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 RDH5Q92781 318 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 ZNF488Q96MN9 340 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 B4GALT7Q9UBV7 327 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 PPIAL4AQ9Y536 164 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 KIAA1549Q9HCM3 1950 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 IGHV3-64DA0A0J9YX35 117 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 NGFP01138 241 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 IL3RAP26951 378 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms