RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PRNDQ9UKY0 176 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 TRAPPC2LQ9UL33 140 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 HS3ST2Q9Y278 367 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 ZNF256Q9Y2P7 627 aaPredicted RBP2.43□□□□□ -2.02
CD44-229ENST00000528672 KLF12Q9Y4X4 402 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 SLC25A15Q9Y619 301 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 POLA1P09884 1462 aaPredicted RBP2.43□□□□□ -2.02
CD44-229ENST00000528672 NUP153P49790 1475 aaKnown RBP2.43□□□□□ -2.02
CD44-229ENST00000528672 TCOF1Q13428 1488 aaKnown RBP2.43□□□□□ -2.02
CD44-229ENST00000528672 FANCD2Q9BXW9 1451 aa2.43□□□□□ -2.02
CD44-229ENST00000528672 YTHDC2Q9H6S0 1430 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 LRP5O75197 1615 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 VIRMAQ69YN4 1812 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 RLFQ13129 1914 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 PHF3Q92576 2039 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 KIF21AQ7Z4S6 1674 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 IQSEC2Q5JU85 1478 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 FYCO1Q9BQS8 1478 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 TONSLQ96HA7 1378 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 DAPL1A0PJW8 107 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 IFITM5A6NNB3 132 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 BTNL10A8MVZ5 291 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 E7EQ34 232 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 RPL36A-HNRNPH2H7BZ11 118 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 K7EMT4 169 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 AIPO00170 330 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 ZNF593O00488 134 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 UBFD1O14562 309 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 ICOSLGO75144 302 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SERPINE1P05121 402 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 DBIP07108 87 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 ADRA2AP08913 450 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 UCHL1P09936 223 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CT45A6P0DMU7 189 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CT45A5P0DMU8 189 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CT45A7P0DMV0 189 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 RPL7P18124 248 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 RCC1P18754 421 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 ORM2P19652 201 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 TCN2P20062 427 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CSRP1P21291 193 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 CDK2P24941 298 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 BLVRBP30043 206 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 SRIP30626 198 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 HRH1P35367 487 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 APOC4P55056 127 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 TNFAIP6P98066 277 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 IFITM3Q01628 133 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SP4Q02446 784 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SLC25A11Q02978 314 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 SMAGPQ0VAQ4 97 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 UNC119Q13432 240 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 HERPUD1Q15011 391 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 PAFAH1B3Q15102 231 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 RGNQ15493 299 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 C15orf32Q32M92 178 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 ZNF404Q494X3 552 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CT45A1Q5HYN5 189 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SPATA31B1PQ5VZV4 182 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR10K2Q6IF99 312 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 TMEM150AQ86TG1 271 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 VKORC1L1Q8N0U8 176 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR8I2Q8N0Y5 310 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR8G5Q8NG78 346 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR4S1Q8NGB4 309 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR4K17Q8NGC6 315 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CT45A3Q8NHU0 189 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SLC37A2Q8TED4 501 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR5P3Q8WZ94 311 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 NDRG1Q92597 394 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 ARPC1AQ92747 370 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 EEF1AKMT3Q96AZ1 226 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 GPR146Q96CH1 333 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 AURKBQ96GD4 344 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 SCGB3A2Q96PL1 93 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 RNF157Q96PX1 679 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 FOXC2Q99958 501 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 MRPL57Q9BQC6 102 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 PSMG3Q9BT73 122 aaPredicted RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 RNASE7Q9H1E1 156 aaKnown RBP2.42□□□□□ -2.02
CD44-229ENST00000528672 SH3BGRL3Q9H299 93 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 NANOGQ9H9S0 305 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 TAF9BQ9HBM6 251 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 FAM49BQ9NUQ9 324 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 XCL2Q9UBD3 114 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SLC23A2Q9UGH3 650 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 NAT8Q9UHE5 227 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 VSIG4Q9Y279 399 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 OR51B2Q9Y5P1 312 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CHD1O14646 1710 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 THSD7BQ9C0I4 1608 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 PIK3C2GO75747 1445 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 SSH2Q76I76 1423 aa2.42□□□□□ -2.02
CD44-229ENST00000528672 CACNA1SQ13698 1873 aa2.41□□□□□ -2.02
CD44-229ENST00000528672 EIF4G3O43432 1585 aaKnown RBP2.41□□□□□ -2.02
CD44-229ENST00000528672 COL5A2P05997 1499 aaPredicted RBP2.41□□□□□ -2.02
CD44-229ENST00000528672 A0A0B4J2A0 478 aa2.41□□□□□ -2.02
CD44-229ENST00000528672 IGHV2OR16-5A0A0B4J2B6 119 aa2.41□□□□□ -2.02
CD44-229ENST00000528672 IGKV1D-13A0A0B4J2D9 117 aa2.41□□□□□ -2.02
CD44-229ENST00000528672 A0A0J9YXY3 114 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms