RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 VPREB3Q9UKI3 123 aa16.73■□□□□ 0.27
CD44-222ENST00000526025 A0A1W2PPI3 338 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 GABARAPH6UMI1 98 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 PTBP1P26599 531 aaKnown RBP eCLIP16.72■□□□□ 0.273e-6■■■■■ 30.2
CD44-222ENST00000526025 ACTBP60709 375 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 ACTG1P63261 375 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 ZNF833PQ6ZTB9 187 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.72■□□□□ 0.27
CD44-222ENST00000526025 PIFOQ8TCI5 191 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 RTN4IP1Q8WWV3 396 aaPredicted RBP16.72■□□□□ 0.27
CD44-222ENST00000526025 PARP12Q9H0J9 701 aaKnown RBP16.72■□□□□ 0.27
CD44-222ENST00000526025 ZNF107Q9UII5 783 aaPredicted RBP16.72■□□□□ 0.27
CD44-222ENST00000526025 GAB2Q9UQC2 676 aa16.72■□□□□ 0.27
CD44-222ENST00000526025 MEIS3P1A6NDR6 274 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 FABP12A6NFH5 140 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 H3BUX3 64 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 ST8SIA5O15466 376 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 ETV6P41212 452 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 IL18Q14116 193 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 KRTAP21-3Q3LHN1 58 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 CCDC190Q86UF4 302 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 OR6Q1Q8NGQ2 317 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 SMIM4Q8WVI0 70 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 FCAMRQ8WWV6 532 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 MTFP1Q9UDX5 166 aa16.71■□□□□ 0.27
CD44-222ENST00000526025 SAA2-SAA4A0A096LPE2 208 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 GSTZ1O43708 216 aaPredicted RBP16.7■□□□□ 0.26
CD44-222ENST00000526025 TUSC2O75896 110 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 SAA2P0DJI9 122 aaPredicted RBP16.7■□□□□ 0.26
CD44-222ENST00000526025 PAX6P26367 422 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 DIAPH2-AS1Q14236 149 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 CDK10Q15131 360 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 THNSL2Q86YJ6 484 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 TGIF2LXQ8IUE1 241 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 OR52I2Q8NH67 350 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 S1PR3Q99500 378 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 PITPNC1Q9UKF7 332 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 TCF19Q9Y242 345 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 OR2W1Q9Y3N9 320 aa16.7■□□□□ 0.26
CD44-222ENST00000526025 IGHV1-3A0A0C4DH29 117 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 FAM90A9PA6NNJ1 464 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 RBBP9O75884 186 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 OR5H8P0DN80 308 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 TBPP20226 339 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 ACTBL2Q562R1 376 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 C16orf87Q6PH81 154 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 LINC00299Q6ZSB3 139 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 OVCH2Q7RTZ1 564 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 LYSMD2Q8IV50 215 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 CFHR4Q92496 578 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 ZNF251Q9BRH9 671 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 CHIAQ9BZP6 476 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 RAB18Q9NP72 206 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 ZNF221Q9UK13 617 aa16.69■□□□□ 0.26
CD44-222ENST00000526025 RBMX2Q9Y388 322 aaKnown RBP16.69■□□□□ 0.26
CD44-222ENST00000526025 TIMM23O14925 209 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 OR3A3P47888 321 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 DYRK1AQ13627 763 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 PLA1AQ53H76 456 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 SPANXN2Q5MJ10 180 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 OR5H2Q8NGV7 314 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 GIMAP1Q8WWP7 306 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 V9GYH0 126 aa16.68■□□□□ 0.26
CD44-222ENST00000526025 A6NDX4 124 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 SLC22A5O76082 557 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 FAM106CPP0CH98 169 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 CD1BP29016 333 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 GPR12P47775 334 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 DGCR2P98153 550 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 MSMO1Q15800 293 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 CNPY1Q3B7I2 92 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 DHRS11Q6UWP2 260 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 FAM131AQ6UXB0 335 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 C16orf82Q7Z2V1 217 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 DRAM1Q8N682 238 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 ABHD14BQ96IU4 210 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 DUX5Q96PT3 197 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 KLK11Q9UBX7 282 aa16.67■□□□□ 0.26
CD44-222ENST00000526025 GPR137BO60478 399 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 OR8U9P0C7N5 309 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 NFYAP23511 347 aaPredicted RBP16.66■□□□□ 0.26
CD44-222ENST00000526025 REG1BP48304 166 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 LUMP51884 338 aaPredicted RBP16.66■□□□□ 0.26
CD44-222ENST00000526025 EBI3Q14213 229 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 VAX1Q5SQQ9 334 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 TMEM229BQ8NBD8 167 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 OR8U1Q8NH10 309 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 OR56B4Q8NH76 319 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 OR2D2Q9H210 308 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 TAS2R8Q9NYW2 309 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 EHFQ9NZC4 300 aa16.66■□□□□ 0.26
CD44-222ENST00000526025 ZNF736B4DX44 427 aaPredicted RBP16.65■□□□□ 0.26
CD44-222ENST00000526025 FCER2P06734 321 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 HLA-DMAP28067 261 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 FCGR2CP31995 323 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 HRH1P35367 487 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 RAB13P51153 203 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 ZNF660Q6AZW8 331 aaPredicted RBP16.65■□□□□ 0.26
CD44-222ENST00000526025 MOB3BQ86TA1 216 aa16.65■□□□□ 0.26
CD44-222ENST00000526025 NABP2Q9BQ15 211 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms