RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 MXRA5Q9NR99 2828 aa12.43□□□□□ -0.42
LSM1-203ENST00000520755 NIPBLQ6KC79 2804 aaeCLIP12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR5H14A6NHG9 310 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 J3QR06 171 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 ITGB1BP1O14713 200 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 ST8SIA5O15466 376 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 PPYP01298 95 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 INPP1P49441 399 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 ASAH1Q13510 395 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 DEFB112Q30KQ8 113 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 MIDNQ504T8 468 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 AADACL3Q5VUY0 350 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 DHRS11Q6UWP2 260 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 ODF3L1Q8IXM7 274 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 LINC00311Q8N616 119 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 SIGLECL1Q8N7X8 197 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 C8orf31Q8N9H6 132 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR51S1Q8NGJ8 323 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR4P4Q8NGL7 312 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR13C8Q8NGS7 320 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR9G1Q8NH87 305 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 GIMAP1Q8WWP7 306 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 DEDD2Q8WXF8 326 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 MOB3AQ96BX8 217 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 ZNF48Q96MX3 618 aaPredicted RBP12.42□□□□□ -0.42
LSM1-203ENST00000520755 ZNF2Q9BSG1 426 aaPredicted RBP12.42□□□□□ -0.42
LSM1-203ENST00000520755 ABHD14AQ9BUJ0 271 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 SLC2A8Q9NY64 477 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 FAM96BQ9Y3D0 163 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 OR2W1Q9Y3N9 320 aa12.42□□□□□ -0.42
LSM1-203ENST00000520755 TOR1AO14656 332 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 LYRM1O43325 122 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 RGS11O94810 467 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 IFNA2P01563 188 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 HLA-DRB5Q30154 266 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 RBMS3Q6XE24 437 aaKnown RBP12.41□□□□□ -0.42
LSM1-203ENST00000520755 OR2AK2Q8NG84 335 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 ZNF418Q8TF45 676 aaPredicted RBP12.41□□□□□ -0.42
LSM1-203ENST00000520755 C17orf50Q8WW18 174 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 ZDHHC16Q969W1 377 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 AJUBAQ96IF1 538 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 MCUBQ9NWR8 336 aa12.41□□□□□ -0.42
LSM1-203ENST00000520755 IGLV2-14P01704 120 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 FAUP35544 74 aaKnown RBP12.4□□□□□ -0.42
LSM1-203ENST00000520755 FXYD4P59646 89 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 TSPAN5P62079 268 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 LHFPL4Q7Z7J7 247 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 BEND2Q8NDZ0 799 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 EDARADDQ8WWZ3 215 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 ABHD14BQ96IU4 210 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 C7orf50Q9BRJ6 194 aaKnown RBP12.4□□□□□ -0.42
LSM1-203ENST00000520755 MMP28Q9H239 520 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 PALMDQ9NP74 551 aa12.4□□□□□ -0.42
LSM1-203ENST00000520755 SAA2-SAA4A0A096LPE2 208 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 DISC1C4P0D8 188 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 IFNA6P05013 189 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 FBP1P09467 338 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 OR8U9P0C7N5 309 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 SAA2P0DJI9 122 aaPredicted RBP12.39□□□□□ -0.43
LSM1-203ENST00000520755 PAX6P26367 422 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 CCR6P51684 374 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 PRRX1P54821 245 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 DCTN2Q13561 401 aaKnown RBP12.39□□□□□ -0.43
LSM1-203ENST00000520755 DIAPH2-AS1Q14236 149 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 SCGB2B2Q4G0G5 96 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 C16orf87Q6PH81 154 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 IDO2Q6ZQW0 420 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 TMEM17Q86X19 198 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 OR6F1Q8NGZ6 308 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 OR8U1Q8NH10 309 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 CREB3L1Q96BA8 519 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 ZNF251Q9BRH9 671 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 OR2D2Q9H210 308 aa12.39□□□□□ -0.43
LSM1-203ENST00000520755 TBL2Q9Y4P3 447 aaKnown RBP12.39□□□□□ -0.43
LSM1-203ENST00000520755 NAP1L6A6NFF2 107 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 LY6LH3BQJ8 138 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 TCF21O43680 179 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 PROP1O75360 226 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 HTR1DP28221 377 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 LUMP51884 338 aaPredicted RBP12.38□□□□□ -0.43
LSM1-203ENST00000520755 ZNF137PP52743 207 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 HERV-K104P61576 105 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 BAMBIQ13145 260 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 PRIMA1Q86XR5 153 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 LYG1Q8N1E2 194 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 TERB2Q8NHR7 220 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 FAM216AQ8WUB2 273 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 SECTM1Q8WVN6 248 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 TOMM40LQ969M1 308 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 ST6GALNAC6Q969X2 333 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 PRRT1Q99946 306 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 RNF150Q9ULK6 438 aa12.38□□□□□ -0.43
LSM1-203ENST00000520755 SETD2Q9BYW2 2564 aaPredicted RBP12.37□□□□□ -0.43
LSM1-203ENST00000520755 BUB1B-PAK6H3BSN5 160 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 SLC6A1P30531 599 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 RAB7AP51149 207 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 SRSF2Q01130 221 aaKnown RBP12.37□□□□□ -0.43
LSM1-203ENST00000520755 EIF4EBP1Q13541 118 aaPredicted RBP12.37□□□□□ -0.43
LSM1-203ENST00000520755 SSX2Q16385 188 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 TUSC1Q2TAM9 212 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms