RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 DEFB136Q30KP8 78 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 DEFB121Q5J5C9 76 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 TMEM91Q6ZNR0 172 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 PRSS48Q7RTY5 328 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 RBMXL1Q96E39 390 aaKnown RBP13.68□□□□□ -0.22
DDX41-217ENST00000515562 CCDC90BQ9GZT6 254 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 OR51J1Q9H342 316 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 C12orf4Q9NQ89 552 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 HSF4Q9ULV5 492 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 OR5H14A6NHG9 310 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 ITGB1BP1O14713 200 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 CRHBPP24387 322 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 CALRP27797 417 aaKnown RBP13.67□□□□□ -0.22
DDX41-217ENST00000515562 HLA-DRB3P79483 266 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 TMEM65Q6PI78 240 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 FAM89BQ8N5H3 189 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 NPBQ8NG41 125 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 MYOZ3Q8TDC0 251 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 EDARADDQ8WWZ3 215 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 GFI1Q99684 422 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 PARP11Q9NR21 331 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 AK3Q9UIJ7 227 aa13.67□□□□□ -0.22
DDX41-217ENST00000515562 IGHV7-81A0A0B4J1V7 117 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 ATP6V0E1O15342 81 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 SOCS1O15524 211 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 NDUFA3O95167 84 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 ZBTB25P24278 435 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 CNTFRP26992 372 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 PPIFP30405 207 aaKnown RBP13.66□□□□□ -0.22
DDX41-217ENST00000515562 DGCR2P98153 550 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 FHL3Q13643 280 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 LIN54Q6MZP7 749 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 FAM131AQ6UXB0 335 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 UBE2E2Q96LR5 201 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 MGLLQ99685 303 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 ACOT13Q9NPJ3 140 aa13.66□□□□□ -0.22
DDX41-217ENST00000515562 AK6Q9Y3D8 172 aaKnown RBP13.66□□□□□ -0.22
DDX41-217ENST00000515562 TRAV41A0A0B4J266 112 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 FOXI3A8MTJ6 420 aaPredicted RBP13.65□□□□□ -0.22
DDX41-217ENST00000515562 HSPA12AO43301 675 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 RAMP3O60896 148 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 MC5RP33032 325 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 HSPA13P48723 471 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 PSMD7P51665 324 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 TBCEQ15813 527 aaPredicted RBP13.65□□□□□ -0.22
DDX41-217ENST00000515562 RPL39P5Q59GN2 51 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 C9orf66Q5T8R8 295 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 OR56B1Q8NGI3 324 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 RITA1Q96K30 269 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 AGMATQ9BSE5 352 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 HDHD3Q9BSH5 251 aaPredicted RBP13.65□□□□□ -0.22
DDX41-217ENST00000515562 BLOC1S6Q9UL45 172 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 WSB1Q9Y6I7 421 aa13.65□□□□□ -0.22
DDX41-217ENST00000515562 G3V318 75 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 RBBP9O75884 186 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 IGLV1-40P01703 118 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 CT45A6P0DMU7 189 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 CT45A5P0DMU8 189 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 CT45A7P0DMV0 189 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 FABP5Q01469 135 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 FAM3DQ96BQ1 224 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 ARHGAP5-AS1Q96IT6 56 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 B9D2Q9BPU9 175 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 PARP12Q9H0J9 701 aaKnown RBP13.64□□□□□ -0.23
DDX41-217ENST00000515562 Q9N2K0 584 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 VSIG4Q9Y279 399 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 WASHC3Q9Y3C0 194 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 V9GY05 133 aa13.64□□□□□ -0.23
DDX41-217ENST00000515562 ERICH4A6NGS2 130 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 H0YJW9 148 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 RRHO14718 337 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 OR8U8P0C7N1 319 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 VEGFCP49767 419 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 LUMP51884 338 aaPredicted RBP13.63□□□□□ -0.23
DDX41-217ENST00000515562 CLDN12P56749 244 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 RUNX1Q01196 453 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 CD69Q07108 199 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 PLGLAQ15195 96 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 VAX1Q5SQQ9 334 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 ZNF660Q6AZW8 331 aaPredicted RBP13.63□□□□□ -0.23
DDX41-217ENST00000515562 IZUMO2Q6UXV1 221 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 ZNF367Q7RTV3 350 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 TCTEX1D1Q8N7M0 179 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 MINDY2Q8NBR6 621 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 OR11H1Q8NG94 326 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 OR5AN1Q8NGI8 311 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 ABHD14BQ96IU4 210 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 CMSS1Q9BQ75 279 aaKnown RBP13.63□□□□□ -0.23
DDX41-217ENST00000515562 PECRQ9BY49 303 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 OR1A1Q9P1Q5 309 aa13.63□□□□□ -0.23
DDX41-217ENST00000515562 SEC14L6B5MCN3 397 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 H7C2Y5 167 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 DENRO43583 198 aaKnown RBP13.62□□□□□ -0.23
DDX41-217ENST00000515562 GSTP1P09211 210 aaKnown RBP13.62□□□□□ -0.23
DDX41-217ENST00000515562 CEACAM6P40199 344 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 MAP2K4P45985 399 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 CRIP2P52943 208 aaPredicted RBP13.62□□□□□ -0.23
DDX41-217ENST00000515562 MRPS15P82914 257 aaKnown RBP13.62□□□□□ -0.23
DDX41-217ENST00000515562 ZNF491Q8N8L2 437 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 PTX4Q96A99 478 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms