RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HARBI1Q96MB7 349 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 RNF7Q9UBF6 113 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 TUBD1Q9UJT1 453 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 B4DEV8 164 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 PGLYRP1O75594 196 aaPredicted RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 LRP11Q86VZ4 500 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 FLVCR1-AS1Q8TAF5 88 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 RHOVQ96L33 236 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 TRAV38-1A0A0B4J264 116 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 NPIPB13A6NJU9 1138 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 NPIPB4C9JG80 1138 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 H0Y980 276 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 CD8AP01732 235 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 LYZP61626 148 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 EFNB1P98172 346 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 OR4C12Q96R67 309 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 RARRES2Q99969 163 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 PRDM6Q9NQX0 595 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 TECRQ9NZ01 308 aaKnown RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 RLFQ13129 1914 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 CDK2AP1O14519 115 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 TRGC2P03986 189 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 CSN3P07498 182 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ZNF658BQ4V348 819 aaPredicted RBP10.91□□□□□ -0.66
USP53-209ENST00000514665 Q56UQ5 140 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ATP1A1-AS1Q5TC04 95 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ATRAIDQ6UW56 229 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 FAM214BQ7L5A3 538 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 FGFRL1Q8N441 504 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 POC1AQ8NBT0 407 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 OR1B1Q8NGR6 318 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 SEBOXQ9HB31 216 aaPredicted RBP10.91□□□□□ -0.66
USP53-209ENST00000514665 SIRT7Q9NRC8 400 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 LOC285556D6RIA3 1793 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ZNF785A8K8V0 405 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 SERF2P84101 59 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 NSUN5P2Q63ZY6 315 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ZBTB34Q8NCN2 500 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 PILRBQ9UKJ0 227 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 SBF1O95248 1867 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 J3QR06 171 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 KIR2DS2P43631 304 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 STARD6P59095 220 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 FA2HQ7L5A8 372 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 ZNF383Q8NA42 475 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 SGMS2Q8NHU3 365 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 AAMDCQ9H7C9 122 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 WIPI2Q9Y4P8 454 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 A0A0G2JMZ2 1700 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 LRRC37A2A6NM11 1700 aa10.91□□□□□ -0.66
USP53-209ENST00000514665 A0A1B0GTI1 187 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 ZIC3O60481 467 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 IGHMP01871 453 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 RPEL1Q2QD12 228 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 TGIF2LYQ8IUE0 185 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 FAM122AQ96E09 287 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 POM121Q96HA1 1249 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 TMEM167BQ9NRX6 74 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 TMEM265A0A087WTH1 108 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 IGHV3-21A0A0B4J1V1 117 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 HOXD4P09016 255 aaPredicted RBP10.9□□□□□ -0.66
USP53-209ENST00000514665 PAX6P26367 422 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 CD1BP29016 333 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 RND3P61587 244 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 SLC35B1P78383 322 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 FAM162BQ5T6X4 162 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 TP53RKQ96S44 253 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 CHCHD2Q9Y6H1 151 aaPredicted RBP10.9□□□□□ -0.66
USP53-209ENST00000514665 IER3P46695 156 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 ARTNQ5T4W7 220 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 ZNF818PQ6ZRF7 136 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 OR4F17Q8NGA8 305 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 VSTM2AQ8TAG5 236 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 GDF15Q99988 308 aa10.9□□□□□ -0.66
USP53-209ENST00000514665 RPL31P62899 125 aaKnown RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 MEF2BQ02080 365 aaPredicted RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 ASPHD2Q6ICH7 369 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 USF3Q68DE3 2245 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 ELOA3CA0A087WX78 387 aaPredicted RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 HELTA6NFD8 242 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 J3QRE1 110 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 TEPPQ6URK8 271 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 LINC00596Q86U02 117 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 MARVELD3Q96A59 401 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 CCL13Q99616 98 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 KLHDC3Q9BQ90 382 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 TMEM210A6NLX4 147 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 NDUFB4O95168 129 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 HTR1DP28221 377 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 WNT5AP41221 380 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 TMEM187Q14656 261 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 WDR25Q64LD2 544 aaPredicted RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 ETFRF1Q6IPR1 90 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 DPPA3Q6W0C5 159 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 C16orf82Q7Z2V1 217 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 PPP1R32Q7Z5V6 425 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 SELENOHQ8IZQ5 122 aaKnown RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 ZNF552Q9H707 407 aaPredicted RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 HEATR1Q9H583 2144 aaKnown RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 RNF222A6NCQ9 220 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms