RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MST1LQ2TV78 715 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 LSM10Q969L4 123 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 RCC1LQ96I51 464 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM56Q96MV1 263 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TTTY12Q9BZ98 90 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM56-RWDD3S4R434 201 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 ASXL3Q9C0F0 2248 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 ST8SIA5O15466 376 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 LYL1P12980 280 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CNN1P51911 297 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM183BQ1AE95 376 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 RPEL1Q2QD12 228 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CLDND2Q8NHS1 167 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 HSD17B10Q99714 261 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 PNRC2Q9NPJ4 139 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 H0Y8G0 127 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 NDUFA2O43678 99 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 C17orf82Q86X59 251 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TPRX1Q8N7U7 411 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 SGMS2Q8NHU3 365 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF552Q9H707 407 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 DECR2Q9NUI1 292 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A087WWC5 75 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CT45A6P0DMU7 189 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CT45A5P0DMU8 189 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CT45A7P0DMV0 189 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CD1BP29016 333 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CT45A1Q5HYN5 189 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 PMS2CLQ68D20 193 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 DHRS13Q6UX07 377 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 LRTM2Q8N967 370 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 CT45A3Q8NHU0 189 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 RAB24Q969Q5 203 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 RNF166Q96A37 237 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 NOL4LQ96MY1 436 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM204Q9BSN7 226 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 PSMG3Q9BT73 122 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 PKIBQ9C010 78 aa7.2□□□□□ -1.26
LIMCH1-216ENST00000512820 COX7A2P2O60397 106 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 HSBP1O75506 76 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 NDUFB4O95168 129 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 MT-CO3P00414 261 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 HBZP02008 142 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 GNG10P50151 68 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TNFRSF9Q07011 255 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 GAMTQ14353 236 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TMPRSS7Q7RTY8 843 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR1L1Q8NH94 360 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IGKV1D-13A0A0B4J2D9 117 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 FAM90A26D6RGX4 464 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 GDF9O60383 454 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IGKV1-13P0DP09 117 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 SRP14P37108 136 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 MPLP40238 635 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 RAB7AP51149 207 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 ICAM4Q14773 271 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 ZADH2Q8N4Q0 377 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM251Q8N6I4 163 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR4P4Q8NGL7 312 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR4D5Q8NGN0 318 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR10X1Q8NGY0 326 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IL36RNQ9UBH0 155 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 HEATR5AQ86XA9 2040 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IGKV1-12A0A0C4DH73 117 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 LRRC3CA6NJW4 275 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 C3orf80F5H4A9 247 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 SCGB2A1O75556 95 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 AGFG2O95081 481 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IGKV1D-12P01611 117 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 COX5BP10606 129 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 CSRP1P21291 193 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR10J1P30954 320 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 BPIFB3P59826 476 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 DCAF10Q5QP82 559 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 KLHDC1Q8N7A1 406 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 OR4S2Q8NH73 311 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 WDR61Q9GZS3 305 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 NOTCH4Q99466 2003 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM210A6NLX4 147 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 B4E171 279 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 KBTBD11O94819 623 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 GZMHP20718 246 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 AGAP20933 346 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TSPAN7P41732 249 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 KIR2DS2P43631 304 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 CEBPDP49716 269 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF83P51522 516 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 MRPL14Q6P1L8 145 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF645Q8N7E2 425 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 IMMP1LQ96LU5 166 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 TPPP3Q9BW30 176 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 PARLQ9H300 379 aa7.19□□□□□ -1.26
LIMCH1-216ENST00000512820 C9JQL5 133 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 CXorf1O96002 111 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 AMTP48728 403 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 OR5P3Q8WZ94 311 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 C1QTNF5Q9BXJ0 243 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A0G2JMM0 328 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A1W2PPB8 328 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A1W2PRS3 328 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms