RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 MAPK14Q16539 360 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 LGALSLQ3ZCW2 172 aaPredicted RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 CCDC122Q5T0U0 273 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 CD200R1LQ6Q8B3 271 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 LRRN1Q6UXK5 716 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 LYZL2Q7Z4W2 148 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 COMMD7Q86VX2 200 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 MSRB3Q8IXL7 192 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 C1orf174Q8IYL3 243 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 Q8N402 240 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 GPR32P1Q8NGA4 272 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 OR51H1Q8NH63 302 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 OR5P3Q8WZ94 311 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 RAB8BQ92930 207 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 TMBIM1Q969X1 311 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 SLC25A44Q96H78 314 aaPredicted RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 UPK3BQ9BT76 320 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 OR51B6Q9H340 312 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 FGFR1OP2Q9NVK5 253 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 DNAJC12Q9UKB3 198 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 YLPM1P49750 1951 aaKnown RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 SEC16AO15027 2179 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 IGKV1D-17A0A075B6S4 117 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 LYPLA2O95372 231 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 CRYGDP07320 174 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 P0C880 135 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 ZNF7P17097 686 aaPredicted RBP2.02□□□□□ -2.09
USP53-204ENST00000507906 PPP1CCP36873 323 aaKnown RBP2.02□□□□□ -2.09
USP53-204ENST00000507906 NIT1Q86X76 327 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 C10orf67Q8IYJ2 551 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 Q8WTZ3 238 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 ABHD14BQ96IU4 210 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 DKKL1Q9UK85 242 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 WASHC3Q9Y3C0 194 aa2.02□□□□□ -2.09
USP53-204ENST00000507906 NUP205Q92621 2012 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 EVC2Q86UK5 1308 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 SHANK3Q9BYB0 1731 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 TMED7-TICAM2A0A0A6YYA0 188 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 LINC00862A6NCI5 91 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 C19orf71A6NCJ1 209 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 SSNA1O43805 119 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 AHSA1O95433 338 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 OR4A8P0C604 315 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 OR10J1P30954 320 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 CDK9P50750 372 aaKnown RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 CTBP2P56545 445 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 RPS24P62847 133 aaKnown RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 SLC35A2P78381 396 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 HLA-DRB3P79483 266 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 FABP5Q01469 135 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 GNA13Q14344 377 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 RSU1Q15404 277 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 MRPL51Q4U2R6 128 aaKnown RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 PYDC2Q56P42 97 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 ACSBG2Q5FVE4 666 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 C1orf195Q5TG92 126 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 OR10K2Q6IF99 312 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 NOXRED1Q6NXP6 359 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 DCXRQ7Z4W1 244 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 ZNF664Q8N3J9 261 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 DNAAF3Q8N9W5 541 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 CCDC112Q8NEF3 446 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 OR10D4PQ8NGN7 298 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 PIGXQ8TBF5 258 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 RNASE6Q93091 150 aaKnown RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 RAD51AP1Q96B01 352 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 TESCQ96BS2 214 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 C1QTNF6Q9BXI9 259 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 OR51I1Q9H343 314 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 BABAM2Q9NXR7 383 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 PCYT1BQ9Y5K3 369 aaPredicted RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 THSD7AQ9UPZ6 1657 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 PLB1Q6P1J6 1458 aa2.01□□□□□ -2.09
USP53-204ENST00000507906 VIRMAQ69YN4 1812 aaKnown RBP2.01□□□□□ -2.09
USP53-204ENST00000507906 SPATA31E1Q6ZUB1 1445 aa2□□□□□ -2.09
USP53-204ENST00000507906 BRD4O60885 1362 aaPredicted RBP2□□□□□ -2.09
USP53-204ENST00000507906 KIF15Q9NS87 1388 aa2□□□□□ -2.09
USP53-204ENST00000507906 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2□□□□□ -2.09
USP53-204ENST00000507906 TEX50A0A1B0GTY4 177 aa2□□□□□ -2.09
USP53-204ENST00000507906 A0A1W2PNM2 257 aa2□□□□□ -2.09
USP53-204ENST00000507906 C17orf98A8MV24 154 aa2□□□□□ -2.09
USP53-204ENST00000507906 A8MWP6 167 aa2□□□□□ -2.09
USP53-204ENST00000507906 S100A6P06703 90 aa2□□□□□ -2.09
USP53-204ENST00000507906 KRT7P08729 469 aa2□□□□□ -2.09
USP53-204ENST00000507906 OPRM1P35372 400 aa2□□□□□ -2.09
USP53-204ENST00000507906 TMEM31Q5JXX7 168 aa2□□□□□ -2.09
USP53-204ENST00000507906 SDIM1Q6ZPB5 146 aa2□□□□□ -2.09
USP53-204ENST00000507906 RASSF6Q6ZTQ3 369 aa2□□□□□ -2.09
USP53-204ENST00000507906 PACRGLQ8N7B6 248 aa2□□□□□ -2.09
USP53-204ENST00000507906 C8orf76Q96K31 380 aa2□□□□□ -2.09
USP53-204ENST00000507906 TMEM109Q9BVC6 243 aa2□□□□□ -2.09
USP53-204ENST00000507906 C11orf1Q9H5F2 150 aa2□□□□□ -2.09
USP53-204ENST00000507906 UCK1Q9HA47 277 aa2□□□□□ -2.09
USP53-204ENST00000507906 HRASLSQ9HDD0 168 aa2□□□□□ -2.09
USP53-204ENST00000507906 ZNF391Q9UJN7 358 aa2□□□□□ -2.09
USP53-204ENST00000507906 GUCA1BQ9UMX6 200 aa2□□□□□ -2.09
USP53-204ENST00000507906 TRPM3Q9HCF6 1732 aaPredicted RBP2□□□□□ -2.09
USP53-204ENST00000507906 ZBED9Q6R2W3 1325 aa1.99□□□□□ -2.09
USP53-204ENST00000507906 ATAD5Q96QE3 1844 aa1.99□□□□□ -2.09
USP53-204ENST00000507906 LOC102725191A0A1B0GVB3 256 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms