RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CXorf1O96002 111 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 RPEL1Q2QD12 228 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 CALHM1Q8IU99 346 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 FGFRL1Q8N441 504 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 CYB561D1Q8N8Q1 229 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 HEXA-AS1Q9H8Q6 139 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF716A6NP11 495 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 LHX2P50458 406 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 HABP2Q14520 560 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 KRTCAP3Q53RY4 240 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 OR1L1Q8NH94 360 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 RPEQ96AT9 228 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 SMIM8Q96KF7 97 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 PLXND1Q9Y4D7 1925 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 SRSF10O75494 262 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 CRYGSP22914 178 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 CLDN18P56856 261 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 TGIF1Q15583 401 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 Q6ZT83 130 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF439Q8NDP4 499 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 OR2T10Q8NGZ9 312 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 MRPL30Q8TCC3 161 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM230Q96A57 120 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 RSG1Q9BU20 258 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 TIMM9Q9Y5J7 89 aa9.21□□□□□ -0.94
LIMCH1-205ENST00000503057 C16orf97H3BN30 126 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 PAGE4O60829 102 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 CLDN14O95500 239 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 CD1BP29016 333 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 FAM78BQ5VT40 261 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 OR10A7Q8NGE5 316 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM37Q8WXS4 190 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 NABP1Q96AH0 204 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 RNF126Q9BV68 326 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 ONECUT1Q9UBC0 465 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 RNF24Q9Y225 148 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 CHEK1O14757 476 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 MPDU1O75352 247 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 NPY1RP25929 384 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 TEPPQ6URK8 271 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF826PQ6ZT77 177 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 MISP3Q96FF7 219 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 OR2V2Q96R30 315 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 P2RX4Q99571 388 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 F8VVB4 439 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 F8VWA3 439 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 SMPD2O60906 423 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 CD3EP07766 207 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 SPCS3P61009 180 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 ERVS71-1P61550 626 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 DHRS7BQ6IAN0 325 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 TPPP3Q9BW30 176 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 ZNF835Q9Y2P0 537 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 CEBPDP49716 269 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 SLC35E4Q6ICL7 350 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 ZIC4Q8N9L1 334 aa9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 PNRC2Q9NPJ4 139 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-205ENST00000503057 TNFRSF9Q07011 255 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 ATP1A1-AS1Q5TC04 95 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 TAF15Q92804 592 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 C18orf12Q96KH6 178 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 GNB4Q9HAV0 340 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 KCNMB2Q9Y691 235 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 NOTCH4Q99466 2003 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 DVL1O14640 695 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 CYB5R3P00387 301 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 FBP1P09467 338 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 MPV17P39210 176 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 TPRX1Q8N7U7 411 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 RND1Q92730 232 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 BCL2L2Q92843 193 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 GPHA2Q96T91 129 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 PPP1R14DQ9NXH3 145 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 CISD1Q9NZ45 108 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 UCP1P25874 307 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 B2MP61769 119 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 PRR27Q6MZM9 219 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 JPT1Q9UK76 154 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 IQCJQ1A5X6 159 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 LURAP1Q96LR2 239 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 FAM103A1Q9BTL3 118 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 TREM2Q9NZC2 230 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 OR51B2Q9Y5P1 312 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 FANCMQ8IYD8 2048 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 ABCA7Q8IZY2 2146 aa9.19□□□□□ -0.94
LIMCH1-205ENST00000503057 ID4P47928 161 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 HIST3H3Q16695 136 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 NCMAPQ5T1S8 102 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 FLYWCH2Q96CP2 140 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 SEBOXQ9HB31 216 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 DEPPQ9NTK1 212 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 LRRC3CA6NJW4 275 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 WDR73Q6P4I2 378 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 C1orf162Q8NEQ5 155 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 SSMEM1Q8WWF3 244 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 SLC25A10Q9UBX3 287 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 ZDHHC8Q9ULC8 765 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 TMEM56-RWDD3S4R434 201 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 OBSL1O75147 1896 aa9.18□□□□□ -0.94
LIMCH1-205ENST00000503057 EP400Q96L91 3159 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms