RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC25A47Q6Q0C1 308 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 TEPPQ6URK8 271 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 C16orf82Q7Z2V1 217 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 LYZL2Q7Z4W2 148 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 MTURNQ8N3F0 131 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 OR8G5Q8NG78 346 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 TP53RKQ96S44 253 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 C11orf94C9JXX5 98 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 SMPD2O60906 423 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 CTSBP07858 339 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 RPL27AP46776 148 aaKnown RBP11.36□□□□□ -0.59
PTPRF-215ENST00000496447 HOGA1Q86XE5 327 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 OR2H2O95918 312 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 P01737 135 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 MC5RP33032 325 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 PDLIM4P50479 330 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM50BP56557 158 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM97Q5BJF2 176 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 ST6GALNAC2Q9UJ37 374 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 IGSF23A1L1A6 192 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 SCGB1C2P0DMR2 95 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 KHDC3LQ587J8 217 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 STXBP6Q8NFX7 210 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 WFIKKN1Q96NZ8 548 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 LY75O60449 1722 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 ATAD5Q96QE3 1844 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 CYB5R3P00387 301 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-215ENST00000496447 COL8A1P27658 744 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 OR4A47Q6IF82 309 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 OR2D3Q8NGH3 330 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 KCNK17Q96T54 332 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 HIGD1AQ9Y241 93 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 WASHC3Q9Y3C0 194 aa11.36□□□□□ -0.59
PTPRF-215ENST00000496447 TIAF1O95411 115 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 CDS2O95674 445 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 FCGR3AP08637 254 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 EFNB2P52799 333 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 NANOS3P60323 173 aaKnown RBP11.35□□□□□ -0.59
PTPRF-215ENST00000496447 PPP1R32Q7Z5V6 425 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 LURAP1LQ8IV03 231 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 SPSB2Q99619 263 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 MGPP08493 103 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 HLA-DRB5Q30154 266 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 SRXN1Q9BYN0 137 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 CD40P25942 277 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 TFPI2P48307 235 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 OR1L6Q8NGR2 347 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 SMIM12Q96EX1 92 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 SCARF2Q96GP6 870 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-215ENST00000496447 TDRD15B5MCY1 1934 aaKnown RBP11.35□□□□□ -0.59
PTPRF-215ENST00000496447 A8MXK9 166 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 ADAD2Q8NCV1 583 aaKnown RBP11.35□□□□□ -0.59
PTPRF-215ENST00000496447 OR4B1Q8NGF8 309 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 HIST1H2BAQ96A08 127 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 AUP1Q9Y679 476 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 HAX1O00165 279 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 ATG101Q9BSB4 218 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 ELOVL5Q9NYP7 299 aa11.35□□□□□ -0.59
PTPRF-215ENST00000496447 FAM157CP0CG43 387 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 RNF224P0DH78 156 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 RCC2Q9P258 522 aaKnown RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 VAX2Q9UIW0 290 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 RALYQ9UKM9 306 aaKnown RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 UNC13CQ8NB66 2214 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 PPIAL4CA0A0B4J2A2 164 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 FAM87AP0C7U9 286 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 PPIAL4GP0DN37 164 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 EWSR1Q01844 656 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 OR11H4Q8NGC9 324 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 OR1P1Q8NH06 330 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 LINC01560Q8TB33 94 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 NUP214P35658 2090 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 C4orf51C9J302 202 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 C1QCP02747 245 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 WNT5AP41221 380 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 CALHM1Q8IU99 346 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM116Q8NCL8 245 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 VN1R17PQ8TDU5 208 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 ABHD14BQ96IU4 210 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 TLNRD1Q9H1K6 362 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 FOXD3Q9UJU5 478 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 BMPR1BO00238 502 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 EBLN2Q6P2I7 272 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 FDX2Q6P4F2 183 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 DHRS11Q6UWP2 260 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM91Q6ZNR0 172 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 SNRNP40Q96DI7 357 aaKnown RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 MRPS18AQ9NVS2 196 aaKnown RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM229AB2RXF0 380 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 UNQ5815/PRO19632Q6UWF5 114 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 KLF14Q8TD94 323 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-215ENST00000496447 PTX4Q96A99 478 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 IL19Q9UHD0 177 aa11.34□□□□□ -0.59
PTPRF-215ENST00000496447 CABIN1Q9Y6J0 2220 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 A1L4Q6 167 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 SMAD7O15105 426 aaKnown RBP11.33□□□□□ -0.6
PTPRF-215ENST00000496447 TCL1AP56279 114 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 ROM1Q03395 351 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 FUT5Q11128 374 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 HIST3H3Q16695 136 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms